From 9ff2ca70ed7b7f461acd8ad84bab8ab5c741a377 Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Sat, 7 Nov 2026 10:10:18 +0100 Subject: [PATCH 01/19] MAINT: upgrade lock files --- .github/workflows/benchmark.yml | 4 +- .github/workflows/cd.yml | 10 +- .github/workflows/ci.yml | 6 +- .github/workflows/clean-caches.yml | 2 +- .github/workflows/lock.yml | 2 +- .github/workflows/pr-linting.yml | 2 +- .pre-commit-config.yaml | 16 +- pyproject.toml | 2 +- uv.lock | 2334 ++++++++++++++-------------- 9 files changed, 1213 insertions(+), 1165 deletions(-) diff --git a/.github/workflows/benchmark.yml b/.github/workflows/benchmark.yml index 2c632c9c..d1f03d95 100644 --- a/.github/workflows/benchmark.yml +++ b/.github/workflows/benchmark.yml @@ -21,10 +21,10 @@ jobs: - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: fetch-depth: 0 - - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0 + - uses: actions/setup-python@6d4fd22b20465ccc0f7354476588e8df7c9ca0e0 # v7.1.0 with: python-version: "3.13" - - uses: astral-sh/setup-uv@1c37ad07a6a961277cf70c0d37d6f313000f5884 # v10.3.0 + - uses: astral-sh/setup-uv@68559e99cc807c1eb7e9238fd43a15bba460eec2 # v10.3.3 - name: Run pytest-benchmark run: uvx --from poethepoet poe benchmark - name: Warn on performance decrease diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml index e82eb05e..bb261d66 100644 --- a/.github/workflows/cd.yml +++ b/.github/workflows/cd.yml @@ -9,9 +9,9 @@ on: jobs: milestone: if: startsWith(github.ref, 'refs/tags') - uses: ComPWA/actions/.github/workflows/close-milestone.yml@313866498eb92c341d7e6b905e09f33a5979dffb # v4.1.4 + uses: ComPWA/actions/.github/workflows/close-milestone.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 package-name: - uses: ComPWA/actions/.github/workflows/get-pypi-name.yml@313866498eb92c341d7e6b905e09f33a5979dffb # v4.1.4 + uses: ComPWA/actions/.github/workflows/get-pypi-name.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 pypi: environment: name: PyPI @@ -24,10 +24,10 @@ jobs: id-token: write runs-on: ubuntu-24.04 steps: - - uses: ComPWA/actions/build-pypi-distribution@313866498eb92c341d7e6b905e09f33a5979dffb # v4.1.4 - - uses: pypa/gh-action-pypi-publish@dc37677b2e1c63e2034f94d8a5b11f265b73ba33 # v1.14.2 + - uses: ComPWA/actions/build-pypi-distribution@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 + - uses: pypa/gh-action-pypi-publish@7245906fb61fa33a13554f9d5fb856fe61758086 # v1.14.3 push: if: startsWith(github.ref, 'refs/tags') && !github.event.release.prerelease permissions: contents: write - uses: ComPWA/actions/.github/workflows/push-to-version-branches.yml@313866498eb92c341d7e6b905e09f33a5979dffb # v4.1.4 + uses: ComPWA/actions/.github/workflows/push-to-version-branches.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 24ff6335..1109b1ba 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -20,7 +20,7 @@ on: jobs: doc: - uses: ComPWA/actions/.github/workflows/ci-docs.yml@313866498eb92c341d7e6b905e09f33a5979dffb # v4.1.4 + uses: ComPWA/actions/.github/workflows/ci-docs.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 permissions: pages: write id-token: write @@ -30,11 +30,11 @@ jobs: style: secrets: token: ${{ secrets.PAT }} - uses: ComPWA/actions/.github/workflows/style.yml@313866498eb92c341d7e6b905e09f33a5979dffb # v4.1.4 + uses: ComPWA/actions/.github/workflows/style.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 with: python-version: "3.13" test: - uses: ComPWA/actions/.github/workflows/test.yml@313866498eb92c341d7e6b905e09f33a5979dffb # v4.1.4 + uses: ComPWA/actions/.github/workflows/test.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 secrets: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} with: diff --git a/.github/workflows/clean-caches.yml b/.github/workflows/clean-caches.yml index daf35b91..0dc0bb85 100644 --- a/.github/workflows/clean-caches.yml +++ b/.github/workflows/clean-caches.yml @@ -16,7 +16,7 @@ jobs: name: Remove caches runs-on: ubuntu-slim steps: - - uses: ComPWA/actions/clean-caches@313866498eb92c341d7e6b905e09f33a5979dffb # v4.1.4 + - uses: ComPWA/actions/clean-caches@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 with: GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} ref: ${{ inputs.ref }} diff --git a/.github/workflows/lock.yml b/.github/workflows/lock.yml index b93469c8..690d8ba8 100644 --- a/.github/workflows/lock.yml +++ b/.github/workflows/lock.yml @@ -17,6 +17,6 @@ on: jobs: lock: - uses: ComPWA/actions/.github/workflows/lock.yml@313866498eb92c341d7e6b905e09f33a5979dffb # v4.1.4 + uses: ComPWA/actions/.github/workflows/lock.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 secrets: token: ${{ secrets.PAT }} diff --git a/.github/workflows/pr-linting.yml b/.github/workflows/pr-linting.yml index 621dea14..4c8ad799 100644 --- a/.github/workflows/pr-linting.yml +++ b/.github/workflows/pr-linting.yml @@ -11,4 +11,4 @@ on: jobs: lint-pr: - uses: ComPWA/actions/.github/workflows/pr-linting.yml@313866498eb92c341d7e6b905e09f33a5979dffb # v4.1.4 + uses: ComPWA/actions/.github/workflows/pr-linting.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 5199f7da..47d8394f 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -16,7 +16,7 @@ repos: - id: check-useless-excludes - repo: https://github.com/ComPWA/policy - rev: 0.10.1 + rev: 0.10.3 hooks: - id: check-dev-files @@ -60,7 +60,7 @@ repos: - id: strip-nb-whitespace - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.17.0 + rev: v0.17.4 hooks: - id: ruff-check args: [--fix] @@ -96,19 +96,19 @@ repos: - id: trailing-whitespace - repo: https://github.com/tombi-toml/tombi-pre-commit - rev: v1.8.2 + rev: v1.10.0 hooks: - id: tombi-format - id: 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Sat, 7 Nov 2026 10:10:22 +0100 Subject: [PATCH 02/19] MAINT: implement pre-commit autofixes --- .github/workflows/ci.yml | 2 -- .readthedocs.yml | 20 +++++++++----------- .vscode/settings.json | 7 +------ 3 files changed, 10 insertions(+), 19 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 1109b1ba..3bd1b9c3 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -35,8 +35,6 @@ jobs: python-version: "3.13" test: uses: ComPWA/actions/.github/workflows/test.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 - secrets: - CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} with: coverage-python-version: "3.13" macos-python-version: "3.11" diff --git a/.readthedocs.yml b/.readthedocs.yml index cc704ce0..85b964b9 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -4,16 +4,14 @@ build: os: ubuntu-24.04 tools: python: "3.13" - commands: - - |- - export PIXI_HOME=$READTHEDOCS_VIRTUALENV_PATH - curl -fsSL https://pixi.sh/install.sh | bash - pixi global install graphviz uv - - |- - export UV_LINK_MODE=copy - uvx --from poethepoet poe doc - mkdir -p $READTHEDOCS_OUTPUT - mv docs/_build/html $READTHEDOCS_OUTPUT - + apt_packages: + - graphviz sphinx: configuration: docs/conf.py + fail_on_warning: true +python: + install: + - method: uv + command: sync + groups: + - doc diff --git a/.vscode/settings.json b/.vscode/settings.json index 374f5fc6..b16e6169 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -47,7 +47,6 @@ } ], "livePreview.defaultPreviewPath": "docs/_build/html", - "multiDiffEditor.experimental.enabled": true, "notebook.codeActionsOnSave": { "notebook.source.organizeImports": "explicit" }, @@ -72,9 +71,5 @@ "testing.showCoverageInExplorer": true, "ty.completions.autoImport": false, "ty.diagnosticMode": "workspace", - "ty.importStrategy": "fromEnvironment", - "yaml.schemas": { - "https://citation-file-format.github.io/1.2.0/schema.json": "CITATION.cff", - "https://json.schemastore.org/github-workflow.json": "./.github/workflows/requirements.yml" - } + "ty.importStrategy": "fromEnvironment" } From 29fd2282df8c19d54b67759aeaf43940cf09d973 Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Sat, 7 Nov 2026 10:10:25 +0100 Subject: [PATCH 03/19] DX: add `CODEOWNERS` file --- .github/CODEOWNERS | 1 + 1 file changed, 1 insertion(+) create mode 100644 .github/CODEOWNERS diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS new file mode 100644 index 00000000..017c2cf3 --- /dev/null +++ b/.github/CODEOWNERS @@ -0,0 +1 @@ +* @ComPWA/maintainers From 976181b320afa86adc91360d1a46d3871d66646d Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Sat, 7 Nov 2026 10:10:28 +0100 Subject: [PATCH 04/19] DOC: use GitHub-style alerts in documentation --- docs/amplitude-analysis.ipynb | 72 ++++++++++---------------------- docs/conf.py | 2 + docs/usage.ipynb | 21 +++------- docs/usage/basics.ipynb | 69 ++++++++++++------------------ docs/usage/faster-lambdify.ipynb | 7 +--- 5 files changed, 59 insertions(+), 112 deletions(-) diff --git a/docs/amplitude-analysis.ipynb b/docs/amplitude-analysis.ipynb index 281255fe..bb64ecee 100644 --- a/docs/amplitude-analysis.ipynb +++ b/docs/amplitude-analysis.ipynb @@ -22,11 +22,8 @@ "2. [Generate hit-and-miss data samples](compwa-step-2) with this amplitude model.\n", "3. [Fit model to the data samples](compwa-step-3).\n", "\n", - ":::{note}\n", - "\n", - "This notebook shows several tricks that _can_ be helpful when doing an amplitude analysis. **Most steps are optional** though—they only serve to illustrate some tips that can be adopted and worked out further for specific analyses.\n", - "\n", - ":::" + "> [!NOTE]\n", + "> This notebook shows several tricks that _can_ be helpful when doing an amplitude analysis. **Most steps are optional** though—they only serve to illustrate some tips that can be adopted and worked out further for specific analyses." ] }, { @@ -105,11 +102,8 @@ "cell_type": "markdown", "metadata": {}, "source": [ - ":::{tip}\n", - "\n", - "See more advanced examples on {doc}`QRules' usage page `.\n", - "\n", - ":::" + "> [!TIP]\n", + "> See more advanced examples on {doc}`QRules' usage page `." ] }, { @@ -260,11 +254,8 @@ "source": [ "In the next steps, we use this {class}`~ampform.helicity.HelicityModel` as a template for a computational function to [generate data](compwa-step-2) and to [perform a fit](compwa-step-3).\n", "\n", - ":::{tip}\n", - "\n", - "See more advanced examples on {doc}`AmpForm's usage page `.\n", - "\n", - ":::" + "> [!TIP]\n", + "> See more advanced examples on {doc}`AmpForm's usage page `." ] }, { @@ -283,9 +274,9 @@ "metadata": {}, "source": [ "::::{margin}\n", - ":::{tip}\n", - "{doc}`TR-018` explains some of the mechanisms behind the phase space generator as well as how to do {ref}`importance sampling`.\n", - ":::\n", + "> [!TIP]\n", + "> {doc}`TR-018` explains some of the mechanisms behind the phase space generator as well as how to do {ref}`importance sampling`.\n", + "\n", "::::\n", "\n", "In this section, we use the {class}`~ampform.helicity.HelicityModel` that we created with {mod}`ampform` in [the previous step](compwa-step-1) to generate a data sample via hit & miss Monte Carlo. We do this with the {mod}`.data` module.\n", @@ -421,9 +412,8 @@ "{doc}`Kinematic expressions ` from AmpForm that involve four-momenta should be formatted as $\\left(E, p_x, p_y, p_z\\right)$. In addition, the shape of input arrays should be `(n, 4)` with `n` the number of events.\n", ":::\n", "\n", - ":::{warning}\n", - "When using the helicity formalism, the sum of the four-momenta should be in the rest frame, that is $\\sum_i p_i = \\left(m_A, 0, 0, 0\\right)$ with $m_A$ the mass of the decaying particle $A$. This is because the helicity formalism boosts through the decay chain starting from particle $A$. **Take care to boost your experimental data into the rest frame**, optionally following the {doc}`kinematics classes provided by AmpForm `.\n", - ":::" + "> [!WARNING]\n", + "> When using the helicity formalism, the sum of the four-momenta should be in the rest frame, that is $\\sum_i p_i = \\left(m_A, 0, 0, 0\\right)$ with $m_A$ the mass of the decaying particle $A$. This is because the helicity formalism boosts through the decay chain starting from particle $A$. **Take care to boost your experimental data into the rest frame**, optionally following the {doc}`kinematics classes provided by AmpForm `." ] }, { @@ -487,11 +477,8 @@ "cell_type": "markdown", "metadata": {}, "source": [ - ":::{tip}\n", - "\n", - "If {func}`.create_parametrized_function` takes a long time, have a look at {doc}`usage/faster-lambdify`.\n", - "\n", - ":::\n", + "> [!TIP]\n", + "> If {func}`.create_parametrized_function` takes a long time, have a look at {doc}`usage/faster-lambdify`.\n", "\n", ":::{seealso}\n", "\n", @@ -582,11 +569,8 @@ "source": [ "As before, we use a {class}`.RealNumberGenerator` with a specific {attr}`~.RealNumberGenerator.seed` to ensure we get a **deterministic** data sample.\n", "\n", - ":::{note}\n", - "\n", - "Instead of constructing a {class}`.TFWeightedPhaseSpaceGenerator`, it's also possible to just reuse the **unweighted** {class}`.TFPhaseSpaceGenerator` that we constructed previously. This is, however, a bit slower, because the {class}`.TFPhaseSpaceGenerator` also uses a hit-and-miss strategy.\n", - "\n", - ":::" + "> [!NOTE]\n", + "> Instead of constructing a {class}`.TFWeightedPhaseSpaceGenerator`, it's also possible to just reuse the **unweighted** {class}`.TFPhaseSpaceGenerator` that we constructed previously. This is, however, a bit slower, because the {class}`.TFPhaseSpaceGenerator` also uses a hit-and-miss strategy." ] }, { @@ -620,9 +604,8 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "::::{note}\n", - "Check the remark about four-momentum format and rest frame of the decaying particle [here](compwa-step-2.1).\n", - "::::\n", + "> [!NOTE]\n", + "> Check the remark about four-momentum format and rest frame of the decaying particle [here](compwa-step-2.1).\n", "\n", "The {obj}`.DataSample` is a mapping of kinematic variable names to a 1-dimensional array of values. The numbers you see here are final state IDs as defined in the {class}`~ampform.helicity.HelicityModel` member of the {class}`~ampform.helicity.HelicityModel`:" ] @@ -819,11 +802,8 @@ "source": [ "In principle, we can use the same {class}`.ParametrizedFunction` as the one that we created in [](compwa-step-2.2). However, when fitting such a function to a data distribution, an {class}`.Optimizer` will evaluate this function numerous times, so it is smart to apply some optimizations to the underlying expression tree beforehand.\n", "\n", - ":::{tip}\n", - "\n", - "The sections below illustrate some tricks for how to simplify the expression tree underneath a {class}`.ParametrizedFunction`. **Most of this can also be achieved with {func}`.create_cached_function`**, which is illustrated in {doc}`/usage/caching` and under [](compwa-create_cached_function). But note that it is still smart to [cast complex-valued data](#cast-complex-valued-data).\n", - "\n", - ":::" + "> [!TIP]\n", + "> The sections below illustrate some tricks for how to simplify the expression tree underneath a {class}`.ParametrizedFunction`. **Most of this can also be achieved with {func}`.create_cached_function`**, which is illustrated in {doc}`/usage/caching` and under [](compwa-create_cached_function). But note that it is still smart to [cast complex-valued data](#cast-complex-valued-data)." ] }, { @@ -1489,11 +1469,8 @@ "source": [ "Finally, we are ready to create an {class}`.Optimizer` that can {meth}`~.Minuit2.optimize` the parameters in the {class}`.ParametrizedFunction` (which is embedded in the {class}`.Estimator`). Here, we choose the {class}`.Minuit2` optimizer, which is the most common optimizer in high-energy physics (see also {ref}`usage/basics:Perform fit with different optimizers`). Since we constructed the {class}`.UnbinnedNLL` with {obj}`jax `, we can optimize the model with an analytic gradient over the {class}`.ParametrizedBackendFunction`:\n", "\n", - ":::{note}\n", - "\n", - "The computation time depends on the complexity of the model, the number of data events, the size of the phase space sample, and the number of free parameters. This model is rather small and has but a few free parameters, so the optimization shouldn't take more than a minute.\n", - "\n", - ":::" + "> [!NOTE]\n", + "> The computation time depends on the complexity of the model, the number of data events, the size of the phase space sample, and the number of free parameters. This model is rather small and has but a few free parameters, so the optimization shouldn't take more than a minute." ] }, { @@ -1673,11 +1650,8 @@ "cell_type": "markdown", "metadata": {}, "source": [ - ":::{note}\n", - "\n", - "Optimizers can only work with real numbers. For this reason, {obj}`complex`-valued parameters are split into a real and an imaginary part. This becomes apparent if we look at the covariance matrix.\n", - "\n", - ":::" + "> [!NOTE]\n", + "> Optimizers can only work with real numbers. For this reason, {obj}`complex`-valued parameters are split into a real and an imaginary part. This becomes apparent if we look at the covariance matrix." ] }, { diff --git a/docs/conf.py b/docs/conf.py index 8b877b0d..cc250eda 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -240,7 +240,9 @@ def get_tensorflow_url() -> str: "themeVariables": {"fontSize": "12px"}, } modindex_common_prefix = [f"{PACKAGE}."] +myst_colon_fence_exact_match = True myst_enable_extensions = [ + "alert", "amsmath", "colon_fence", "dollarmath", diff --git a/docs/usage.ipynb b/docs/usage.ipynb index 364fca47..640b0d09 100644 --- a/docs/usage.ipynb +++ b/docs/usage.ipynb @@ -158,11 +158,8 @@ "source": [ "Next, we construct an {class}`.Estimator` and an {class}`.Optimizer`. These are used to {meth}`~.Optimizer.optimize` the {class}`.ParametrizedFunction` to the data distribution.\n", "\n", - ":::{tip}\n", - "\n", - "{mod}`.callbacks` allow inserting custom behavior into the {class}`.Optimizer`. Here, we create a custom callback to create an animation of the fit!\n", - "\n", - ":::" + "> [!TIP]\n", + "> {mod}`.callbacks` allow inserting custom behavior into the {class}`.Optimizer`. Here, we create a custom callback to create an animation of the fit!" ] }, { @@ -321,11 +318,8 @@ "source": [ "::::{margin}\n", "\n", - ":::{note}\n", - "\n", - "Execution time in this example is slow, because of the animation of the fit process.\n", - "\n", - ":::\n", + "> [!NOTE]\n", + "> Execution time in this example is slow, because of the animation of the fit process.\n", "\n", "::::" ] @@ -353,11 +347,8 @@ "cell_type": "markdown", "metadata": {}, "source": [ - ":::{tip}\n", - "\n", - "This example uses {class}`.ChiSquared` as estimator, because this works nicely with binned data (see also {doc}`/usage/binned-fit` and {doc}`/usage/chi-squared`). For other estimator examples, see {doc}`/usage/unbinned-fit`, {doc}`/usage/basics`, and {doc}`/amplitude-analysis`.\n", - "\n", - ":::" + "> [!TIP]\n", + "> This example uses {class}`.ChiSquared` as estimator, because this works nicely with binned data (see also {doc}`/usage/binned-fit` and {doc}`/usage/chi-squared`). For other estimator examples, see {doc}`/usage/unbinned-fit`, {doc}`/usage/basics`, and {doc}`/amplitude-analysis`." ] }, { diff --git a/docs/usage/basics.ipynb b/docs/usage/basics.ipynb index 55104ff5..7ffbef0b 100644 --- a/docs/usage/basics.ipynb +++ b/docs/usage/basics.ipynb @@ -202,13 +202,10 @@ "cell_type": "markdown", "metadata": {}, "source": [ - ":::{tip}\n", - "\n", - "\n", - "\n", - "Here, we used `use_cse=False` in {func}`.create_parametrized_function`. Setting this argument to `True` (the default) causes {mod}`sympy` to search for common sub-expressions, which speeds up lambdification in large expressions and makes the lambdified source code more efficient. See also {func}`~sympy.simplify.cse_main.cse`.\n", - "\n", - ":::\n", + "> [!TIP]\n", + "> \n", + ">\n", + "> Here, we used `use_cse=False` in {func}`.create_parametrized_function`. Setting this argument to `True` (the default) causes {mod}`sympy` to search for common sub-expressions, which speeds up lambdification in large expressions and makes the lambdified source code more efficient. See also {func}`~sympy.simplify.cse_main.cse`.\n", "\n", "The resulting {class}`.ParametrizedBackendFunction` internally carries some source code that {mod}`numpy` understands. With {func}`.get_source_code`, we can see that it indeed looks similar to the expression that we formulated in {ref}`usage/basics:Formulate model`:" ] @@ -423,11 +420,10 @@ "\n", "Since we are generating **uniformly distributed** random values of $x$ and computing their $f(x)$ values, we can keep track of which value of $f(x)$ is the highest. Starting with $y_\\mathrm{max} = 0$ we just set $y_\\mathrm{max} = f(x)$ once $f(x) > y_\\mathrm{max}$ and _completely restart_ the generate loop. Eventually, some value of $x$ will lie near the absolute maximum of $f$ and the data generation will happily continue until the requested number of events has been reached.\n", "\n", - "```{warning}\n", - "There are two caveats:\n", - "1. The domain sample (here: the uniformly distributed values of $x$) has to be large in order for the data sample to accurately describe the original function.\n", - "2. If the function displays narrow structures, like some sharp global maximum containing $y_\\mathrm{max}$, chances are smaller that the value of $x$ will lie within this peak. The domain sample will therefore have to be even larger. It will also take longer before $y_\\mathrm{max}$ is found.\n", - "```" + "> [!WARNING]\n", + "> There are two caveats:\n", + "> 1. The domain sample (here: the uniformly distributed values of $x$) has to be large in order for the data sample to accurately describe the original function.\n", + "> 2. If the function displays narrow structures, like some sharp global maximum containing $y_\\mathrm{max}$, chances are smaller that the value of $x$ will lie within this peak. The domain sample will therefore have to be even larger. It will also take longer before $y_\\mathrm{max}$ is found." ] }, { @@ -461,25 +457,19 @@ "cell_type": "markdown", "metadata": {}, "source": [ - ":::{tip}\n", - "\n", - "Set a `seed` in the {class}`.RealNumberGenerator` if you want to generate a **deterministic** data sample. If you leave it unspecified, you get an **non-deterministic** data sample.\n", + "> [!TIP]\n", + "> Set a `seed` in the {class}`.RealNumberGenerator` if you want to generate a **deterministic** data sample. If you leave it unspecified, you get an **non-deterministic** data sample.\n", "\n", - ":::\n", - "\n", - ":::{tip}\n", - "\n", - "You can disable the progress bar through the {mod}`logging` module:\n", - "\n", - "```python\n", - "import logging\n", - "\n", - "logging.getLogger(\"tensorwaves.data\").setLevel(logging.ERROR)\n", - "```\n", - "\n", - "Use `\"tensorwaves\"` to regulate all {mod}`tensorwaves` logging.\n", - "\n", - ":::\n", + "> [!TIP]\n", + "> You can disable the progress bar through the {mod}`logging` module:\n", + ">\n", + "> ```python\n", + "> import logging\n", + ">\n", + "> logging.getLogger(\"tensorwaves.data\").setLevel(logging.ERROR)\n", + "> ```\n", + ">\n", + "> Use `\"tensorwaves\"` to regulate all {mod}`tensorwaves` logging.\n", "\n", "When we feed the generated domain sample to the {class}`.ParametrizedBackendFunction` and use its output values as weights to the histogram of the uniform domain sample, we see that the domain nicely produces a distribution as expected from the {ref}`model we defined `:" ] @@ -522,9 +512,8 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "```{note}\n", - "In PWA, the sample on which we perform hit-and-miss is not uniform, because the available space is limited by the masses of the initial and final state (phase space). See {class}`.TFPhaseSpaceGenerator` and {ref}`amplitude-analysis:Step 2: Generate data`.\n", - "```" + "> [!NOTE]\n", + "> In PWA, the sample on which we perform hit-and-miss is not uniform, because the available space is limited by the masses of the initial and final state (phase space). See {class}`.TFPhaseSpaceGenerator` and {ref}`amplitude-analysis:Step 2: Generate data`." ] }, { @@ -714,11 +703,8 @@ "cell_type": "markdown", "metadata": {}, "source": [ - ":::{tip}\n", - "\n", - "For complicated expressions, the fit can be made faster with {func}`.create_cached_function`. See {doc}`/usage/caching`.\n", - "\n", - ":::\n", + "> [!TIP]\n", + "> For complicated expressions, the fit can be made faster with {func}`.create_cached_function`. See {doc}`/usage/caching`.\n", "\n", "And again, we have a look at the resulting fit, as well as what happened during the optimization." ] @@ -1130,11 +1116,8 @@ "cell_type": "markdown", "metadata": {}, "source": [ - ":::{warning}\n", - "\n", - "SciPy does not provide error values for the optimized parameters.\n", - "\n", - ":::" + "> [!WARNING]\n", + "> SciPy does not provide error values for the optimized parameters." ] }, { diff --git a/docs/usage/faster-lambdify.ipynb b/docs/usage/faster-lambdify.ipynb index d2c63e36..564fccdc 100644 --- a/docs/usage/faster-lambdify.ipynb +++ b/docs/usage/faster-lambdify.ipynb @@ -45,11 +45,8 @@ "cell_type": "markdown", "metadata": {}, "source": [ - ":::{note}\n", - "\n", - "Since [#374](https://github.com/ComPWA/tensorwaves/pull/374), expressions are lambdified with common sub-expressions. This should already reduce lambdification time significantly and also results in faster computational functions.\n", - "\n", - ":::" + "> [!NOTE]\n", + "> Since [#374](https://github.com/ComPWA/tensorwaves/pull/374), expressions are lambdified with common sub-expressions. This should already reduce lambdification time significantly and also results in faster computational functions." ] }, { From c069303d89869de062e49b336270147d38df757f Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Sat, 7 Nov 2026 10:10:32 +0100 Subject: [PATCH 05/19] MAINT: remove the VS Code Live Share recommendation --- .vscode/extensions.json | 1 - 1 file changed, 1 deletion(-) diff --git a/.vscode/extensions.json b/.vscode/extensions.json index ea08bed5..f81299ff 100644 --- a/.vscode/extensions.json +++ b/.vscode/extensions.json @@ -14,7 +14,6 @@ "ms-toolsai.jupyter", "ms-toolsai.vscode-jupyter-cell-tags", "ms-vscode.live-server", - "ms-vsliveshare.vsliveshare", "redhat.vscode-yaml", "soulcode.vscode-unwanted-extensions", "stkb.rewrap", From 9852b1596931b07bdc72aceb044ffc94eaaeae85 Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Sat, 7 Nov 2026 10:10:36 +0100 Subject: [PATCH 06/19] MAINT: resolve ty diagnostics in progress reporting and imports --- benchmarks/precision.py | 4 ++-- benchmarks/unbinned_nll.py | 2 +- src/tensorwaves/function/sympy/__init__.py | 2 +- tests/function/test_backend.py | 2 +- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/benchmarks/precision.py b/benchmarks/precision.py index f15471c2..98e9b106 100644 --- a/benchmarks/precision.py +++ b/benchmarks/precision.py @@ -42,7 +42,7 @@ def _create_data(backend: Backend): return {"x": jnp.linspace(0, 10, num=1_000_000).block_until_ready()} - import tensorflow.experimental.numpy as tnp # ty: ignore[unresolved-import] + import tensorflow.experimental.numpy as tnp # ty: ignore[import-not-found] return {"x": tnp.linspace(0, 10, num=1_000_000)} @@ -64,6 +64,6 @@ def _assert_precision( assert jax.config.x64_enabled == (precision == "float64") else: - import tensorflow.experimental.numpy as tnp # ty: ignore[unresolved-import] + import tensorflow.experimental.numpy as tnp # ty: ignore[import-not-found] assert tnp.asarray(1.0).dtype.name == precision diff --git a/benchmarks/unbinned_nll.py b/benchmarks/unbinned_nll.py index 646e0a66..1f8f6a5b 100644 --- a/benchmarks/unbinned_nll.py +++ b/benchmarks/unbinned_nll.py @@ -9,7 +9,7 @@ import numpy as np import pytest import tensorflow as tf -import tensorflow.experimental.numpy as tnp # ty: ignore[unresolved-import] +import tensorflow.experimental.numpy as tnp # ty: ignore[import-not-found] from tensorwaves import configure from tensorwaves.estimator import UnbinnedNLL diff --git a/src/tensorwaves/function/sympy/__init__.py b/src/tensorwaves/function/sympy/__init__.py index 3438b8c6..3515e264 100644 --- a/src/tensorwaves/function/sympy/__init__.py +++ b/src/tensorwaves/function/sympy/__init__.py @@ -580,7 +580,7 @@ def recursive_split(sub_expression: sp.Basic) -> sp.Expr: free_symbols = _get_free_symbols(top_expression) remaining_symbols = free_symbols - set(symbol_mapping) symbol_mapping.update({s: s for s in remaining_symbols}) # ty:ignore[no-matching-overload] - remainder = progress_bar.total - progress_bar.n + remainder = n_operations - progress_bar.n progress_bar.update(n=remainder) progress_bar.close() return top_expression, symbol_mapping diff --git a/tests/function/test_backend.py b/tests/function/test_backend.py index 9085aff6..4d021522 100644 --- a/tests/function/test_backend.py +++ b/tests/function/test_backend.py @@ -24,7 +24,7 @@ def it_falls_back_to_numpy_for_numba(): def it_finds_tensorflow_functions(): import tensorflow as tf - import tensorflow.experimental.numpy as tnp # ty:ignore[unresolved-import] + import tensorflow.experimental.numpy as tnp # ty:ignore[import-not-found] assert find_function("array", backend="tf") is tnp.array assert find_function("linspace", backend="tf") is tnp.linspace From 54fa4bfc89319bc3f9757e6e3c72c497c2fc3318 Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Sat, 7 Nov 2026 10:10:41 +0100 Subject: [PATCH 07/19] MAINT: remove redundant gitignore exceptions --- .gitignore | 1 - 1 file changed, 1 deletion(-) diff --git a/.gitignore b/.gitignore index 7541f658..ee7c6c00 100644 --- a/.gitignore +++ b/.gitignore @@ -52,5 +52,4 @@ CLAUDE.md !.pre-commit-config.yaml !.readthedocs.yml !.vscode/*.json -!.zenodo.json !codecov.yml From a6068fd093f26aeb535462ddd0bfee090395a02b Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Sat, 7 Nov 2026 10:10:44 +0100 Subject: [PATCH 08/19] MAINT: normalize dependency specifier spacing --- pyproject.toml | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index dc801e6b..46988854 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -31,13 +31,13 @@ classifiers = [ "Typing :: Typed", ] dependencies = [ - "PyYAML >=5.1", # https://stackoverflow.com/a/55171433 - "attrs >=20.1.0", # https://www.attrs.org/en/stable/api.html#next-gen - "iminuit >=2.0", + "PyYAML>=5.1", # https://stackoverflow.com/a/55171433 + "attrs>=20.1.0", # https://www.attrs.org/en/stable/api.html#next-gen + "iminuit>=2.0", "numpy", "rich", - "sympy >=1.9", # lambdify cse - "tqdm >=4.24.0", # autonotebook + "sympy>=1.9", # lambdify cse + "tqdm>=4.24.0", # autonotebook ] dynamic = ["version"] @@ -54,10 +54,10 @@ Source = "https://github.com/ComPWA/tensorwaves" [project.optional-dependencies] jax = ["jax", "jaxlib"] numba = ["numba"] -phsp = ["phasespace[tf] >=1.7.0", "tensorwaves[tf]"] +phsp = ["phasespace[tf]>=1.7.0", "tensorwaves[tf]"] pwa = ["ampform[viz]>=0.12.0", "tensorwaves[phsp]"] -scipy = ["scipy >=1"] -tf = ["tensorboard", "tensorflow >=2.12"] +scipy = ["scipy>=1"] +tf = ["tensorboard", "tensorflow>=2.12"] [dependency-groups] dev = [ @@ -98,7 +98,7 @@ notebooks = [ "ipympl", "matplotlib", "pandas", - "qrules >=0.10.12", # qrules.io.asmermaid + "qrules>=0.10.12", # qrules.io.asmermaid "rich[jupyter]", "tensorwaves[jax,pwa]", ] From 3f3174461fc786abae121cc1b81e9be59a15bb44 Mon Sep 17 00:00:00 2001 From: GitHub Date: Sat, 7 Nov 2026 09:25:34 +0000 Subject: [PATCH 09/19] MAINT: implement updates from formatters --- docs/amplitude-analysis.ipynb | 2 +- docs/usage.ipynb | 2 +- docs/usage/basics.ipynb | 2 +- docs/usage/faster-lambdify.ipynb | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/docs/amplitude-analysis.ipynb b/docs/amplitude-analysis.ipynb index bb64ecee..33fa6d3c 100644 --- a/docs/amplitude-analysis.ipynb +++ b/docs/amplitude-analysis.ipynb @@ -1893,7 +1893,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.13.16" + "version": "3.13.18" } }, "nbformat": 4, diff --git a/docs/usage.ipynb b/docs/usage.ipynb index 640b0d09..192ccb48 100644 --- a/docs/usage.ipynb +++ b/docs/usage.ipynb @@ -778,7 +778,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.13.16" + "version": "3.13.18" } }, "nbformat": 4, diff --git a/docs/usage/basics.ipynb b/docs/usage/basics.ipynb index 7ffbef0b..50e12b0c 100644 --- a/docs/usage/basics.ipynb +++ b/docs/usage/basics.ipynb @@ -1246,7 +1246,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.13.16" + "version": "3.13.18" } }, "nbformat": 4, diff --git a/docs/usage/faster-lambdify.ipynb b/docs/usage/faster-lambdify.ipynb index 564fccdc..2cddc3b6 100644 --- a/docs/usage/faster-lambdify.ipynb +++ b/docs/usage/faster-lambdify.ipynb @@ -370,7 +370,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.13.16" + "version": "3.13.18" } }, "nbformat": 4, From 6637899a076871bf55e35574324e7a23dd835324 Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Sat, 7 Nov 2026 14:49:18 +0100 Subject: [PATCH 10/19] FIX: move the benchmark model to a module-level fixture --- benchmarks/ampform.py | 21 +++++++++++---------- 1 file changed, 11 insertions(+), 10 deletions(-) diff --git a/benchmarks/ampform.py b/benchmarks/ampform.py index d6b64149..299246e4 100644 --- a/benchmarks/ampform.py +++ b/benchmarks/ampform.py @@ -123,6 +123,17 @@ def fit( return optimizer.optimize(estimator, initial_parameters) +@pytest.fixture(scope="session") +def model() -> HelicityModel: + return formulate_amplitude_model( + formalism="canonical-helicity", + initial_state=("J/psi(1S)", [-1, +1]), + final_state=["gamma", "pi0", "pi0"], + intermediate_states=["f(0)(500)", "f(0)(980)"], + interaction_types=["EM", "strong"], + ) + + class TestJPsiToGammaPiPi: expected_data = { "p0": [ @@ -148,16 +159,6 @@ class TestJPsiToGammaPiPi: ], } - @pytest.fixture(scope="session") - def model(self) -> HelicityModel: - return formulate_amplitude_model( - formalism="canonical-helicity", - initial_state=("J/psi(1S)", [-1, +1]), - final_state=["gamma", "pi0", "pi0"], - intermediate_states=["f(0)(500)", "f(0)(980)"], - interaction_types=["EM", "strong"], - ) - @pytest.mark.benchmark(group="data", min_rounds=1) @pytest.mark.parametrize("backend", ["jax", "numpy", "tf"]) @pytest.mark.parametrize("size", [10_000]) From 36f410af5e9cebdfe114f22f3187b2f7a0041328 Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Mon, 9 Nov 2026 16:58:07 +0100 Subject: [PATCH 11/19] MAINT: simplify and audit lychee link checks --- .gitignore | 1 + .vscode/settings.json | 2 +- docs/conf.py | 11 ------ pyproject.toml | 41 ++++++++++++++++------ src/tensorwaves/function/sympy/_printer.py | 2 +- 5 files changed, 33 insertions(+), 24 deletions(-) diff --git a/.gitignore b/.gitignore index ee7c6c00..7f960bc7 100644 --- a/.gitignore +++ b/.gitignore @@ -25,6 +25,7 @@ version.py .coverage.* .ipynb_checkpoints/ .jupyter_ystore.db +.lycheecache .pytest_cache/ .virtual_documents/ __pycache__/ diff --git a/.vscode/settings.json b/.vscode/settings.json index b16e6169..adcfc362 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -43,7 +43,7 @@ }, { "fileMatch": [".zenodo.json"], - "url": "https://zenodo.org/schemas/deposits/records/legacyrecord.json" + "url": "https://raw.githubusercontent.com/zenodo/zenodo/master/zenodo/modules/deposit/jsonschemas/deposits/records/legacyrecord.json" } ], "livePreview.defaultPreviewPath": "docs/_build/html", diff --git a/docs/conf.py b/docs/conf.py index cc250eda..f907a529 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -218,17 +218,6 @@ def get_tensorflow_url() -> str: "sympy": ("https://docs.sympy.org/latest", None), "tensorflow": (get_tensorflow_url(), "tensorflow.inv"), } -linkcheck_anchors = bool(os.environ.get("CI")) -linkcheck_anchors_ignore = [ - r"pip\-installation\-gpu\-cuda", -] -linkcheck_ignore = [ - "https://doi.org/10.5281/zenodo", # 403 for zenodo.org - "https://stackoverflow.com/a/9730706", - "https://unix.stackexchange.com/a/129144", - "https://zenodo.org", # 403 -] -linkcheck_timeout = 60 mermaid_height = "auto" # do not stretch diagrams to the default 500px mermaid_init_config = { "flowchart": { diff --git a/pyproject.toml b/pyproject.toml index 46988854..971af786 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -32,7 +32,7 @@ classifiers = [ ] dependencies = [ "PyYAML>=5.1", # https://stackoverflow.com/a/55171433 - "attrs>=20.1.0", # https://www.attrs.org/en/stable/api.html#next-gen + "attrs>=20.1.0", # https://www.attrs.org/en/stable/api.html#attrs.define "iminuit>=2.0", "numpy", "rich", @@ -162,6 +162,32 @@ omit = [ ] source = ["src"] +[tool.lychee] +cache = true +cache_exclude_status = "400.." +# [:] keeps Lychee from extracting regex patterns as URLs. +exclude = [ + '^https[:]//stackoverflow\.com/a/9730706', # Preserved from the Sphinx linkcheck configuration + '^https[:]//unix\.stackexchange\.com/a/129144', # Preserved from the Sphinx linkcheck configuration + "%7B[^/]*%7D", # URL templates are completed at build or runtime + "^https[:]//x-access-token/$", # Token-authenticated Git remote placeholder + '\$(?:NEXT_[A-Z_]+|PREVIOUS_TAG)', # Release Drafter substitutes these placeholders at runtime + "^https[:]//compwa/$", # Organisation placeholder in a configuration example + '^https[:]//stackoverflow\.com/a/55171433$', # Rejects automated requests with 403 +] +exclude_path = ["tests"] # Test fixtures contain dummy URLs +extensions = ["css", "ipynb", "json", "md", "py", "toml", "yaml", "yml"] +hidden = true # Include the workflows under .github/ +include_fragments = "anchor-only" +include_verbatim = true +max_cache_age = "7d" +remap = [ + '^git\+(https[:]//[^@]+)(@.*)?$ $1', + "^(.+)/n$ $1", + '^(https[:]//github\.com/ComPWA/tensorwaves/compare)/\$PREVIOUS_TAG.*$ $1', + '^https[:]//pypi\.org/p/\$$ https://pypi.org/project/tensorwaves/', +] + [tool.poe.executor] isolated = true no-group = "dev" @@ -238,16 +264,9 @@ help = "Set up a server to directly preview changes to the HTML pages with cache sequence = ["doclive"] [tool.poe.groups.doc.tasks.linkcheck] -cmd = """ -sphinx-build \ - --builder=linkcheck \ - --show-traceback \ - docs/ \ - docs/_build/linkcheck/ -""" -env = { PYTHONWARNINGS = "" } -executor = { group = "doc" } -help = "Check external links in the documentation (requires internet connection)" +cmd = "uvx --from lychee-bin lychee . --quiet" +executor = { type = "simple" } +help = "Check links and fragments in repository sources (requires internet connection)" [tool.poe.groups.notebook] heading = "Notebooks" diff --git a/src/tensorwaves/function/sympy/_printer.py b/src/tensorwaves/function/sympy/_printer.py index 9ebdf003..aef3f9d5 100644 --- a/src/tensorwaves/function/sympy/_printer.py +++ b/src/tensorwaves/function/sympy/_printer.py @@ -82,7 +82,7 @@ class TensorflowPrinter(CustomNumPyPrinter): _module = "tnp" def __init__(self) -> None: - # https://github.com/sympy/sympy/blob/f1384c2/sympy/printing/printer.py#L21-L72 + # https://docs.sympy.org/latest/modules/printing.html#sympy.printing.printer.Printer super().__init__() self.known_functions["ArraySize"] = "len" self.printmethod = "_tensorflow_code" From 90f5a1f95b109bbf3daeb84226b4d8385f3d9eaf Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Mon, 9 Nov 2026 20:01:00 +0100 Subject: [PATCH 12/19] MAINT: upgrade lock files and workflow dependencies --- .envrc | 3 +- .github/dependabot.yml | 1 - .pre-commit-config.yaml | 11 +- .vscode/settings.json | 9 +- codecov.yml | 2 - pyproject.toml | 10 +- src/tensorwaves/__init__.py | 22 ++-- src/tensorwaves/data/__init__.py | 9 +- src/tensorwaves/data/phasespace.py | 21 ++-- src/tensorwaves/data/transform.py | 7 +- src/tensorwaves/estimator.py | 96 ++++++++------- src/tensorwaves/function/__init__.py | 8 +- src/tensorwaves/function/_backend.py | 5 +- src/tensorwaves/function/sympy/__init__.py | 130 ++++++++++----------- src/tensorwaves/function/sympy/_printer.py | 2 +- src/tensorwaves/interface.py | 2 +- src/tensorwaves/optimizer/callbacks.py | 28 ++--- src/tensorwaves/optimizer/minuit.py | 17 ++- src/tensorwaves/optimizer/scipy.py | 4 +- uv.lock | 96 ++++++++------- 20 files changed, 245 insertions(+), 238 deletions(-) diff --git a/.envrc b/.envrc index 41fd2cab..da058e3f 100644 --- a/.envrc +++ b/.envrc @@ -1,2 +1 @@ -uv sync --all-extras --quiet -source .venv/bin/activate +layout uv --all-extras --quiet diff --git a/.github/dependabot.yml b/.github/dependabot.yml index d3fcb937..b3d03ae8 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -2,7 +2,6 @@ version: 2 multi-ecosystem-groups: lock: - assignees: [redeboer] commit-message: { prefix: MAINT } schedule: { interval: quarterly } diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 47d8394f..1e0b2fb1 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -16,7 +16,7 @@ repos: - id: check-useless-excludes - repo: https://github.com/ComPWA/policy - rev: 0.10.3 + rev: 0.10.4 hooks: - id: check-dev-files @@ -64,9 +64,7 @@ repos: hooks: - id: ruff-check args: [--fix] - types_or: [python, pyi, jupyter] - id: ruff-format - types_or: [python, pyi, jupyter] - repo: https://github.com/pre-commit/pre-commit-hooks rev: v6.0.0 @@ -96,7 +94,7 @@ repos: - id: trailing-whitespace - repo: https://github.com/tombi-toml/tombi-pre-commit - rev: v1.10.0 + rev: v1.11.1 hooks: - id: tombi-format - id: tombi-lint @@ -125,6 +123,11 @@ repos: hooks: - id: cspell + - repo: https://github.com/LilSpazJoekp/docstrfmt + rev: v2.2.1 + hooks: + - id: docstrfmt + - repo: https://github.com/editorconfig-checker/editorconfig-checker.python rev: 3.11.1 hooks: diff --git a/.vscode/settings.json b/.vscode/settings.json index adcfc362..24410fbe 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -7,13 +7,9 @@ "rewrap.wrappingColumn": 72 }, "[json]": { - "editor.defaultFormatter": "esbenp.prettier-vscode", "editor.wordWrap": "on" }, - "[jsonc]": { - "editor.defaultFormatter": "esbenp.prettier-vscode" - }, - "[markdown]": { + "[json][jsonc][markdown][yaml]": { "editor.defaultFormatter": "esbenp.prettier-vscode" }, "[python]": { @@ -26,9 +22,6 @@ "[toml]": { "editor.defaultFormatter": "tombi-toml.tombi" }, - "[yaml]": { - "editor.defaultFormatter": "esbenp.prettier-vscode" - }, "cSpell.enabled": true, "diffEditor.experimental.showMoves": true, "editor.formatOnSave": true, diff --git a/codecov.yml b/codecov.yml index f2688114..6cffe152 100644 --- a/codecov.yml +++ b/codecov.yml @@ -9,8 +9,6 @@ coverage: status: project: default: - target: 85% - threshold: 3% base: auto if_no_uploads: error if_not_found: success diff --git a/pyproject.toml b/pyproject.toml index 971af786..17c73d13 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -62,6 +62,7 @@ tf = ["tensorboard", "tensorflow>=2.12"] [dependency-groups] dev = [ "ruff", + "ty", { include-group = "doc" }, { include-group = "jupyter" }, { include-group = "style" }, @@ -103,7 +104,6 @@ notebooks = [ "tensorwaves[jax,pwa]", ] style = [ - "ty", { include-group = "notebooks" }, { include-group = "types" }, ] @@ -150,6 +150,7 @@ type-checker = ["ty"] [tool.coverage.report] exclude_also = ["if TYPE_CHECKING:"] +fail_under = 85 [tool.coverage.run] branch = true @@ -162,6 +163,10 @@ omit = [ ] source = ["src"] +[tool.docstrfmt] +docstring-trailing-line = false +format-python-code-blocks = false + [tool.lychee] cache = true cache_exclude_status = "400.." @@ -307,7 +312,6 @@ positional = true cmd = """ pytest \ --cov=tensorwaves \ - --cov-fail-under=85 \ --cov-report=html \ --cov-report=xml \ ${paths} @@ -638,7 +642,7 @@ key-empty = "off" [[tool.tombi.schemas]] root = "tool.compwa.policy" -path = "https://raw.githubusercontent.com/ComPWA/policy/0.10.3/compwa-policy.schema.json" +path = "https://raw.githubusercontent.com/ComPWA/policy/0.10.4/compwa-policy.schema.json" include = ["pyproject.toml"] [[tool.ty.overrides]] diff --git a/src/tensorwaves/__init__.py b/src/tensorwaves/__init__.py index 62fe936d..d69bd9a7 100644 --- a/src/tensorwaves/__init__.py +++ b/src/tensorwaves/__init__.py @@ -2,19 +2,19 @@ The `tensorwaves` package contains four main ingredients: - Function creation (`tensorwaves.function`) - Express arbitrary mathematical expressions as functions in different kinds of - computational backends, such as :doc:`JAX `, `TensorFlow - `_, `NumPy `_, and `Numba - `_. + Function creation (`tensorwaves.function`) + Express arbitrary mathematical expressions as functions in different kinds of + computational backends, such as :doc:`JAX `, `TensorFlow + `_, `NumPy `_, and `Numba + `_. - Data generation (`tensorwaves.data`) - Generate phase space samples as well as hit-and-miss Monte Carlo samples for the - input mathematical expression. + Data generation (`tensorwaves.data`) + Generate phase space samples as well as hit-and-miss Monte Carlo samples for the + input mathematical expression. - Optimization (`tensorwaves.optimizer` and `.estimator`) - Optimize a `.ParametrizedFunction` with respect to some data sample and an - `.Estimator` (loss function). + Optimization (`tensorwaves.optimizer` and `.estimator`) + Optimize a `.ParametrizedFunction` with respect to some data sample and an + `.Estimator` (loss function). The `.interface` module defines how the main classes interact. """ diff --git a/src/tensorwaves/data/__init__.py b/src/tensorwaves/data/__init__.py index fb6622a5..b40faddb 100644 --- a/src/tensorwaves/data/__init__.py +++ b/src/tensorwaves/data/__init__.py @@ -55,13 +55,16 @@ class IntensityDistributionGenerator(DataGenerator): Args: domain_generator: A `.DataGenerator` that can be used to generate a - **domain** `.DataSample` over which to evaluate the :code:`function`. + **domain** `.DataSample` over which to evaluate the ``function``. + function: An **intensity** `.Function` with which the output distribution `.DataSample` is generated using a :ref:`hit-and-miss strategy `. + domain_transformer: Optional `.DataTransformer` that can convert a generated - **domain** `.DataSample` to a `.DataSample` that the :code:`function` can - take as input. + **domain** `.DataSample` to a `.DataSample` that the ``function`` can take + as input. + bunch_size: Size of a bunch that is generated during a hit-and-miss iteration. """ diff --git a/src/tensorwaves/data/phasespace.py b/src/tensorwaves/data/phasespace.py index cc823824..18d1276f 100644 --- a/src/tensorwaves/data/phasespace.py +++ b/src/tensorwaves/data/phasespace.py @@ -31,9 +31,9 @@ class TFPhaseSpaceGenerator(DataGenerator): """Implements a phase space generator using tensorflow. Args: - initial_state_mass: Mass of the decaying state. - final_state_masses: A mapping of final state IDs to the corresponding masses. - bunch_size: Size of a bunch that is generated during a hit-and-miss iteration. + initial_state_mass: Mass of the decaying state. final_state_masses: A mapping of + final state IDs to the corresponding masses. bunch_size: Size of a bunch that is + generated during a hit-and-miss iteration. """ def __init__( @@ -55,7 +55,9 @@ def generate(self, size: int, rng: RealNumberGenerator) -> DataSample: Returns: A `.DataSample` of **four-momenta** arrays of shape :math:`n \times 4`. - .. seealso:: :ref:`amplitude-analysis:2.1 Generate phase space sample` + .. seealso:: + + :ref:`amplitude-analysis:2.1 Generate phase space sample` """ progress_bar = tqdm( total=size, @@ -87,14 +89,15 @@ def generate(self, size: int, rng: RealNumberGenerator) -> DataSample: class TFWeightedPhaseSpaceGenerator(DataGenerator): """Implements a phase space generator **with weights** using tensorflow. - The weights are provided in the returned `.DataSample` under the key - :code:`"weights"`. + The weights are provided in the returned `.DataSample` under the key ``"weights"``. Args: - initial_state_mass: Mass of the decaying state. - final_state_masses: A mapping of final state IDs to the corresponding masses. + initial_state_mass: Mass of the decaying state. final_state_masses: A mapping of + final state IDs to the corresponding masses. + + .. seealso:: - .. seealso:: :ref:`amplitude-analysis:2.2 Generate intensity-based sample` + :ref:`amplitude-analysis:2.2 Generate intensity-based sample` """ def __init__( diff --git a/src/tensorwaves/data/transform.py b/src/tensorwaves/data/transform.py index aae2b7ab..9df44e18 100644 --- a/src/tensorwaves/data/transform.py +++ b/src/tensorwaves/data/transform.py @@ -23,10 +23,9 @@ class ChainedDataTransformer(DataTransformer): """Combine multiple `.DataTransformer` classes into one. - Args: - transformer: Ordered list of transformers that you want to chain. - extend: Set to `True` in order to keep keys of each output `.DataSample` and - collect them into the final, chained `.DataSample`. + :param transformer: Ordered list of transformers that you want to chain. + :param extend: Set to `True` in order to keep keys of each output `.DataSample` and + collect them into the final, chained `.DataSample`. """ transformers: tuple[DataTransformer, ...] = field(converter=to_tuple) diff --git a/src/tensorwaves/estimator.py b/src/tensorwaves/estimator.py index b0a92fbf..625eb4fe 100644 --- a/src/tensorwaves/estimator.py +++ b/src/tensorwaves/estimator.py @@ -39,26 +39,27 @@ def create_cached_function( Once it is known which parameters in an expression are to be optimized, this function makes it easy to cache constant sub-trees. - Args: - expression: The `~sympy.core.expr.Expr` that should be expressed in a - computational backend. - parameters: Symbols in the :code:`expression` that should be - interpreted as parameters. The values in this mapping will be used in the - returned :attr:`.ParametrizedFunction.parameters`. - backend: The computational backend to which in which to express the - input :code:`expression`. - free_parameters: Symbols in the expression that change and should not be cached. - use_cse: See :func:`.create_parametrized_function`. - - Returns: - A 'cached' `.ParametrizedFunction` with only the free + :param expression: The `~sympy.core.expr.Expr` that should be expressed in a + computational backend. + :param parameters: Symbols in the ``expression`` that should be interpreted as + parameters. The values in this mapping will be used in the returned + :attr:`.ParametrizedFunction.parameters`. + :param backend: The computational backend to which in which to express the input + ``expression``. + :param free_parameters: Symbols in the expression that change and should not be + cached. + :param use_cse: See :func:`.create_parametrized_function`. + + :returns: A 'cached' `.ParametrizedFunction` with only the free `~.ParametrizedFunction.parameters` that are to be optimized and a `.DataTransformer` that needs to be used to transform a data sample for the original expression to the cached function. - .. seealso:: This function is an extension of :func:`.prepare_caching` and - :func:`.create_parametrized_function`. :doc:`/usage/caching` shows how - to use this function. + .. seealso:: + + This function is an extension of :func:`.prepare_caching` and + :func:`.create_parametrized_function`. :doc:`/usage/caching` shows how to use + this function. """ cache_expression, transformer_expressions = prepare_caching( expression, parameters, free_parameters @@ -108,21 +109,24 @@ def raise_gradient_not_implemented( class ChiSquared(Estimator): r"""Chi-squared test estimator. - .. math:: \chi^2 = \sum_{i=1}^n w_i\left(y_i - f_\mathbf{p}(x_i)\right)^2 - - Args: - function: A `.ParametrizedFunction` :math:`f_\mathbf{p}` with - a set of free `~.ParametrizedFunction.parameters` :math:`\mathbf{p}`. - domain: Input data-set :math:`\mathbf{x}` of :math:`n` events - :math:`x_i` over which to compute :code:`function` :math:`f_\mathbf{p}`. - observed_values: Observed values :math:`y_i`. - weights: Optional weights :math:`w_i`. Default: :math:`w_i=1` - (unweighted). A common choice is :math:`w_i = 1/\sigma_i^2`, with - :math:`\sigma_i` the uncertainty in each measured value of :math:`y_i`. - backend: Computational backend with which to compute the sum - :math:`\sum_{i=1}^n`. - - .. seealso:: :doc:`/usage/chi-squared` + .. math:: + + \chi^2 = \sum_{i=1}^n w_i\left(y_i - f_\mathbf{p}(x_i)\right)^2 + + :param function: A `.ParametrizedFunction` :math:`f_\mathbf{p}` with a set of free + `~.ParametrizedFunction.parameters` :math:`\mathbf{p}`. + :param domain: Input data-set :math:`\mathbf{x}` of :math:`n` events :math:`x_i` + over which to compute ``function`` :math:`f_\mathbf{p}`. + :param observed_values: Observed values :math:`y_i`. + :param weights: Optional weights :math:`w_i`. Default: :math:`w_i=1` (unweighted). A + common choice is :math:`w_i = 1/\sigma_i^2`, with :math:`\sigma_i` the + uncertainty in each measured value of :math:`y_i`. + :param backend: Computational backend with which to compute the sum + :math:`\sum_{i=1}^n`. + + .. seealso:: + + :doc:`/usage/chi-squared` """ def __init__( @@ -174,22 +178,24 @@ class UnbinnedNLL(Estimator): space) domain sample :math:`\mathbf{x}_\mathrm{phsp}` of size :math:`n`: .. math:: + \lambda = \frac{\sum_{j=1}^n V f_\mathbf{p}(x_{\mathrm{phsp},j})}{n}. - Args: - function: A `.ParametrizedFunction` :math:`f_\mathbf{p}` that describes - a distribution over a certain domain. - data: The `.DataSample` :math:`\mathbf{x}` over which to compute - :math:`f_\mathbf{p}`. - phsp: The domain (phase space) with which the likelihood is normalized. - When correcting for the detector efficiency, use a phase space sample that - passed the detector reconstruction. - phsp_volume: Optional phase space volume :math:`V`, used in the - normalization factor. Default: :math:`V=1`. - backend: The computational back-end with which the sums and averages - should be computed. - - .. seealso:: :doc:`/usage/unbinned-fit` + :param function: A `.ParametrizedFunction` :math:`f_\mathbf{p}` that describes a + distribution over a certain domain. + :param data: The `.DataSample` :math:`\mathbf{x}` over which to compute + :math:`f_\mathbf{p}`. + :param phsp: The domain (phase space) with which the likelihood is normalized. When + correcting for the detector efficiency, use a phase space sample that passed the + detector reconstruction. + :param phsp_volume: Optional phase space volume :math:`V`, used in the normalization + factor. Default: :math:`V=1`. + :param backend: The computational back-end with which the sums and averages should + be computed. + + .. seealso:: + + :doc:`/usage/unbinned-fit` """ def __init__( diff --git a/src/tensorwaves/function/__init__.py b/src/tensorwaves/function/__init__.py index 4b008013..4bc5d38e 100644 --- a/src/tensorwaves/function/__init__.py +++ b/src/tensorwaves/function/__init__.py @@ -76,7 +76,9 @@ class PositionalArgumentFunction(Function[DataSample, np.ndarray]): :attr:`argument_order` redirect the keys in the `.DataSample` to the argument positions in its underlying :attr:`function`. - .. seealso:: :func:`.create_function` + .. seealso:: + + :func:`.create_function` """ function: Callable[..., np.ndarray] = field(validator=_validate_arguments) @@ -94,7 +96,9 @@ def __call__(self, data: DataSample) -> np.ndarray: class ParametrizedBackendFunction(ParametrizedFunction[DataSample, np.ndarray]): """Implements `.ParametrizedFunction` for a specific computational back-end. - .. seealso:: :func:`.create_parametrized_function` + .. seealso:: + + :func:`.create_parametrized_function` """ def __init__( diff --git a/src/tensorwaves/function/_backend.py b/src/tensorwaves/function/_backend.py index f5cd72ee..ce71604f 100644 --- a/src/tensorwaves/function/_backend.py +++ b/src/tensorwaves/function/_backend.py @@ -35,9 +35,8 @@ def find_function(function_name: str, backend: str) -> Callable: def get_backend_modules(backend: str | tuple | dict) -> str | tuple | dict: """Preprocess the backend argument passed to `~sympy.utilities.lambdify.lambdify`. - In `~sympy.utilities.lambdify.lambdify` the backend is specified via the - :code:`modules` argument. Several back-ends can be specified by passing a `tuple` or - dict`. + In `~sympy.utilities.lambdify.lambdify` the backend is specified via the ``modules`` + argument. Several back-ends can be specified by passing a `tuple` or dict`. """ if isinstance(backend, str): if backend == "jax": diff --git a/src/tensorwaves/function/sympy/__init__.py b/src/tensorwaves/function/sympy/__init__.py index 3515e264..4de14b9d 100644 --- a/src/tensorwaves/function/sympy/__init__.py +++ b/src/tensorwaves/function/sympy/__init__.py @@ -38,18 +38,17 @@ def create_function( ) -> PositionalArgumentFunction: """Convert a SymPy expression to a computational function. - Args: - expression: The SymPy expression that you want to - `~sympy.utilities.lambdify.lambdify`. Its `~sympy.core.basic.Basic.free_symbols` - become arguments to the resulting `.PositionalArgumentFunction`. - backend: The computational backend in which to express the function. - use_cse: Identify common sub-expressions in the function. This usually makes the - function faster and speeds up lambdification. - use_jit: Decorate the numerical function with a Just-in-Time decorator for the - selected :code:`backend`. By default (`None`), functions are JIT-compiled if - the backend supports JIT compilation. - max_complexity: See :ref:`usage/faster-lambdify:Specifying complexity` and - :doc:`compwa-report:002/index`. + :param expression: The SymPy expression that you want to + `~sympy.utilities.lambdify.lambdify`. Its `~sympy.core.basic.Basic.free_symbols` + become arguments to the resulting `.PositionalArgumentFunction`. + :param backend: The computational backend in which to express the function. + :param use_cse: Identify common sub-expressions in the function. This usually makes + the function faster and speeds up lambdification. + :param use_jit: Decorate the numerical function with a Just-in-Time decorator for + the selected ``backend``. By default (`None`), functions are JIT-compiled if the + backend supports JIT compilation. + :param max_complexity: See :ref:`usage/faster-lambdify:Specifying complexity` and + :doc:`compwa-report:002/index`. Example: >>> import numpy as np @@ -94,17 +93,16 @@ def create_parametrized_function( # ruff:ignore[too-many-arguments] This is an extended version of :func:`create_function`, which allows one to identify certain symbols in the expression as parameters. - Args: - expression: See :func:`create_function`. - parameters: The symbols in the expression that are be identified as - `~.ParametrizedFunction.parameters` in the returned - `.ParametrizedBackendFunction`. - backend: See :func:`create_function`. - use_cse: See :func:`create_function`. - use_jit: Decorate the numerical function with a Just-in-Time decorator for the - selected :code:`backend`. By default (`None`), functions are JIT-compiled if - the backend supports JIT compilation. - max_complexity: See :func:`create_function`. + :param expression: See :func:`create_function`. + :param parameters: The symbols in the expression that are be identified as + `~.ParametrizedFunction.parameters` in the returned + `.ParametrizedBackendFunction`. + :param backend: See :func:`create_function`. + :param use_cse: See :func:`create_function`. + :param use_jit: Decorate the numerical function with a Just-in-Time decorator for + the selected ``backend``. By default (`None`), functions are JIT-compiled if the + backend supports JIT compilation. + :param max_complexity: See :func:`create_function`. Example: >>> import numpy as np @@ -148,7 +146,7 @@ def _substitute_matrix_elements(expression: Symbolic) -> Symbolic: """Substitute elements of matrix symbols with actual symbol objects. This is a workaround for the fact that the `~sympy.core.basic.Basic.free_symbols` of - an expression containing `~sympy.matrices.expressions.MatrixSymbol`s does not + an expression containing `~sympy.matrices.expressions.MatrixSymbol` objects does not contain the individual elements of these matrix symbols, but only the matrix symbols themselves. @@ -231,18 +229,17 @@ def lambdify( # ruff:ignore[complex-structure, too-many-return-statements] ) -> Callable: """A wrapper around :func:`~sympy.utilities.lambdify.lambdify`. - Args: - expression: the `sympy.Expr ` that you want to express as - a function in a certain computation back-end. - symbols: The `~sympy.core.symbol.Symbol` instances in the expression that you - want to serve as **positional arguments** in the lambdified function. Note - that positional arguments are **ordered**. - backend: Computational back-end in which to express the lambdified function. - use_cse: Lambdify with common sub-expressions (see :code:`cse` argument in - :func:`~sympy.utilities.lambdify.lambdify`). - use_jit: Decorate the numerical function with a Just-in-Time decorator for the - selected :code:`backend`. By default (`None`), functions are JIT-compiled if - the backend supports JIT compilation. + :param expression: the `sympy.Expr ` that you want to express + as a function in a certain computation back-end. + :param symbols: The `~sympy.core.symbol.Symbol` instances in the expression that you + want to serve as **positional arguments** in the lambdified function. Note that + positional arguments are **ordered**. + :param backend: Computational back-end in which to express the lambdified function. + :param use_cse: Lambdify with common sub-expressions (see ``cse`` argument in + :func:`~sympy.utilities.lambdify.lambdify`). + :param use_jit: Decorate the numerical function with a Just-in-Time decorator for + the selected ``backend``. By default (`None`), functions are JIT-compiled if the + backend supports JIT compilation. """ def jax_lambdify() -> Callable: @@ -426,18 +423,18 @@ def extract_constant_sub_expressions( :func:`create_parametrized_function`, while the `dict` of sub-expressions can be given to a `.SympyDataTransformer.from_sympy`. - Args: - expression: The `~sympy.core.expr.Expr` from which to extract constant - sub-expressions. - free_symbols: `~sympy.core.symbol.Symbol` instance in the main - :code:`expression` that are not constant. - fix_order: If `False`, the generated symbols for the sub-expressions - are not deterministic, because they depend on the hashes of those - sub-expressions. Setting this to `True` makes the order deterministic, but - this is slower, because requires lambdifying each sub-expression to `str` - first. - - .. seealso:: :ref:`usage/caching:Extract constant sub-expressions` + :param expression: The `~sympy.core.expr.Expr` from which to extract constant + sub-expressions. + :param free_symbols: `~sympy.core.symbol.Symbol` instance in the main ``expression`` + that are not constant. + :param fix_order: If `False`, the generated symbols for the sub-expressions are not + deterministic, because they depend on the hashes of those sub-expressions. + Setting this to `True` makes the order deterministic, but this is slower, + because requires lambdifying each sub-expression to `str` first. + + .. seealso:: + + :ref:`usage/caching:Extract constant sub-expressions` """ import sympy as sp @@ -492,23 +489,22 @@ def prepare_caching( The top expression can be given to :func:`create_parametrized_function`, while the `dict` of sub-expressions can be given to a `.SympyDataTransformer.from_sympy`. - Args: - expression: The `~sympy.core.expr.Expr` from which to extract constant - sub-expressions. - parameters: A mapping of values for each of the parameter symbols in - the :code:`expression`. Parameters that are not :code:`free_parameters` are - substituted in the returned expressions with - :meth:`~sympy.core.basic.Basic.xreplace`. - free_parameters: `~sympy.core.symbol.Symbol` instances in the main - :code:`expression` that are to be considered parameters and that will be - optimized by an `.Optimizer` later on. - fix_order: If `False`, the generated symbols for the sub-expressions - are not deterministic, because they depend on the hashes of those - sub-expressions. Setting this to `True` makes the order deterministic, but - this is slower, because requires lambdifying each sub-expression to `str` - first. - - .. seealso:: :ref:`usage/caching:Extract constant sub-expressions` + :param expression: The `~sympy.core.expr.Expr` from which to extract constant + sub-expressions. + :param parameters: A mapping of values for each of the parameter symbols in the + ``expression``. Parameters that are not ``free_parameters`` are substituted in + the returned expressions with :meth:`~sympy.core.basic.Basic.xreplace`. + :param free_parameters: `~sympy.core.symbol.Symbol` instances in the main + ``expression`` that are to be considered parameters and that will be optimized + by an `.Optimizer` later on. + :param fix_order: If `False`, the generated symbols for the sub-expressions are not + deterministic, because they depend on the hashes of those sub-expressions. + Setting this to `True` makes the order deterministic, but this is slower, + because requires lambdifying each sub-expression to `str` first. + + .. seealso:: + + :ref:`usage/caching:Extract constant sub-expressions` """ free_parameter_values = {} fixed_parameter_values = {} @@ -545,7 +541,9 @@ def split_expression( :meth:`~sympy.core.basic.Basic.count_ops`) with symbols and keep a mapping of each to these symbols to the sub-expressions that they replaced. - .. seealso:: :doc:`/usage/faster-lambdify` + .. seealso:: + + :doc:`/usage/faster-lambdify` """ import sympy as sp diff --git a/src/tensorwaves/function/sympy/_printer.py b/src/tensorwaves/function/sympy/_printer.py index aef3f9d5..55798679 100644 --- a/src/tensorwaves/function/sympy/_printer.py +++ b/src/tensorwaves/function/sympy/_printer.py @@ -45,7 +45,7 @@ def _forward_to_numpy_printer( Args: class_names: The names of classes that should be printed with their - :code:`_numpycode()` method. + ``_numpycode()`` method. """ def decorator(decorated_class: type[_T]) -> type[_T]: diff --git a/src/tensorwaves/interface.py b/src/tensorwaves/interface.py index 6a97b784..23863a58 100644 --- a/src/tensorwaves/interface.py +++ b/src/tensorwaves/interface.py @@ -229,7 +229,7 @@ class DataGenerator(ABC): @abstractmethod def generate(self, size: int, rng: RealNumberGenerator) -> DataSample: - r"""Generate a `.DataSample` with :code:`size` events. + r"""Generate a `.DataSample` with ``size`` events. Returns: A `tuple` of a `.DataSample` with an array of weights. diff --git a/src/tensorwaves/optimizer/callbacks.py b/src/tensorwaves/optimizer/callbacks.py index 65432684..f5b675ac 100644 --- a/src/tensorwaves/optimizer/callbacks.py +++ b/src/tensorwaves/optimizer/callbacks.py @@ -32,7 +32,9 @@ def load_latest_parameters(filename: Path | str) -> dict: ... class Callback(ABC): """Interface for callbacks such as `.CSVSummary`. - .. seealso:: :ref:`usage/basics:Callbacks` + .. seealso:: + + :ref:`usage/basics:Callbacks` """ @abstractmethod @@ -101,12 +103,11 @@ def on_function_call_end( class RichProgressBar(Callback): """Display a `rich` progress bar during optimization. - Args: - *columns: The :ref:`columns ` to display in the progress bar. If - not provided, a default set of columns will be used. - **progress_kwargs: Keyword arguments forwarded to `rich.progress.Progress`. - total: The expected total number of function calls to be made during - optimization in order to get a time estimate. + :param columns: The :ref:`columns ` to display in the progress bar. If + not provided, a default set of columns will be used. + :param progress_kwargs: Keyword arguments forwarded to `rich.progress.Progress`. + :param total: The expected total number of function calls to be made during + optimization in order to get a time estimate. """ def __init__( @@ -173,8 +174,8 @@ def on_function_call_end( class TqdmProgressBar(Callback): """Display a ``tqdm`` progress bar during optimization. - Args: - **tqdm_kwargs: Keyword arguments forwarded to `tqdm `_. + :param tqdm_kwargs: Keyword arguments forwarded to `tqdm + `_. """ def __init__(self, **tqdm_kwargs: Any) -> None: @@ -396,11 +397,10 @@ def on_function_call_end( class YAMLSummary(Callback, Loadable): """Write current fit parameters and the estimator value to a YAML file. - Arguments: - filename: The name of output YAML file to write the logs to. - step_size: The number of function calls between each log entry. - git_friendly: If `True`, entries that are differ per run in reproducible fits, - such as :code:`time`, are omitted from the log. + :param filename: The name of output YAML file to write the logs to. + :param step_size: The number of function calls between each log entry. + :param git_friendly: If `True`, entries that are differ per run in reproducible + fits, such as ``time``, are omitted from the log. """ def __init__( diff --git a/src/tensorwaves/optimizer/minuit.py b/src/tensorwaves/optimizer/minuit.py index 9bb01cd8..5f30afae 100644 --- a/src/tensorwaves/optimizer/minuit.py +++ b/src/tensorwaves/optimizer/minuit.py @@ -24,15 +24,14 @@ class Minuit2(Optimizer): Implements the `~.interface.Optimizer` interface using `iminuit.Minuit`. - Args: - callback: Optionally insert behavior through :mod:`.callbacks` into the - :meth:`optimize` method. - use_analytic_gradient: Use the :meth:`.Estimator.gradient` when calling - :meth:`optimize`. - minuit_modifier: Modify the internal `iminuit.Minuit` optimizer that is - constructed during the :meth:`optimize` call. See - :ref:`usage/basics:Minuit2` for an example. - migrad_args: Keyword arguments given to :meth:`iminuit.Minuit.migrad`. + :param callback: Optionally insert behavior through :mod:`.callbacks` into the + :meth:`optimize` method. + :param use_analytic_gradient: Use the :meth:`.Estimator.gradient` when calling + :meth:`optimize`. + :param minuit_modifier: Modify the internal `iminuit.Minuit` optimizer that is + constructed during the :meth:`optimize` call. See :ref:`usage/basics:Minuit2` + for an example. + :param migrad_args: Keyword arguments given to :meth:`iminuit.Minuit.migrad`. """ def __init__( diff --git a/src/tensorwaves/optimizer/scipy.py b/src/tensorwaves/optimizer/scipy.py index 915ea2b2..20deda3d 100644 --- a/src/tensorwaves/optimizer/scipy.py +++ b/src/tensorwaves/optimizer/scipy.py @@ -24,7 +24,9 @@ class ScipyMinimizer(Optimizer): Implements the `~.interface.Optimizer` interface. - .. seealso:: :ref:`usage/basics:Scipy` + .. seealso:: + + :ref:`usage/basics:Scipy` """ def __init__( diff --git a/uv.lock b/uv.lock index 28c6091b..c86c81eb 100644 --- a/uv.lock +++ b/uv.lock @@ -3,22 +3,22 @@ revision = 5 requires-python = ">=3.11" resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] @@ -592,10 +592,10 @@ version = "1.3.3" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -682,16 +682,16 @@ version = "1.4.0" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1548,10 +1548,10 @@ version = "0.10.2" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1572,16 +1572,16 @@ version = "0.12.0.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1602,10 +1602,10 @@ version = "0.10.2" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1644,16 +1644,16 @@ version = "0.12.0.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -2796,10 +2796,10 @@ version = "2.4.6" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] sdist = { url = "https://files.pythonhosted.org/packages/d0/ad/fed0499ce6a338d2a03ebae59cd15093910c8875328855781952abf6c2fe/numpy-2.4.6.tar.gz", hash = "sha256:f3a3570c4a2a16746ac2c31a7c7c7b0c186b95ce902e33db6f28094ed7387dda", size = 20735807, upload-time = "2026-05-18T23:37:14.07Z" } @@ -2883,16 +2883,16 @@ version = "2.5.4" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] sdist = { url = "https://files.pythonhosted.org/packages/95/b0/c7453d0b6e2073c3264468b106ee1563750cecc910965e67357e3698c83e/numpy-2.5.4.tar.gz", hash = "sha256:9a94cf751c9ad8ebaa835bcd3d40dacf8534ad086b88c38029b65123c7999d2a", size = 20866315, upload-time = "2026-10-10T20:05:31.422Z" } @@ -4208,10 +4208,10 @@ version = "1.17.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -4287,16 +4287,16 @@ version = "1.18.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -4431,16 +4431,16 @@ version = "4.0.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", @@ -4457,10 +4457,10 @@ version = "9.0.4" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -4526,10 +4526,10 @@ version = "9.2.0" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", @@ -4592,7 +4592,7 @@ wheels = [ [[package]] name = "sphinx-codeautolink" -version = "0.19.0" +version = "0.20.0" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "beautifulsoup4" }, @@ -4600,9 +4600,9 @@ dependencies = [ { name = "sphinx", version = "9.1.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version == '3.12.*'" }, { name = "sphinx", version = "9.2.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.13'" }, ] -sdist = { url = "https://files.pythonhosted.org/packages/26/4e/92425c60359fa7b5b9ac0e0f1f788b86a89c4e65cf29139e1174e21e3adf/sphinx_codeautolink-0.19.0.tar.gz", hash = "sha256:abd8367831bb0b084ecad7b0a9b77f8458294e4468cadd5f37861da9b38e3e7e", size = 65422, upload-time = "2026-07-29T17:40:15.222Z" } +sdist = { url = "https://files.pythonhosted.org/packages/b2/73/8834a0494e23498864d1ed5d997ee9ace99dd09da8378e6f2f0362a4fcd9/sphinx_codeautolink-0.20.0.tar.gz", hash = "sha256:d135b4cc33d79f886df259b31b89d3d124cf2c66246f4a551b2a5a018cf7d638", size = 68282, upload-time = "2026-11-08T10:34:39.294Z" } wheels = [ - { url = "https://files.pythonhosted.org/packages/fd/86/260d30033dbc48f8a0c37334159d56a1a731a7ce752d2803a6b5174e8731/sphinx_codeautolink-0.19.0-py3-none-any.whl", hash = "sha256:ebbaf815efee63cfdc5320a97ece7eb01af38f22ed404439bee520e9c8175605", size = 37671, upload-time = "2026-07-29T17:40:13.739Z" }, + { url = "https://files.pythonhosted.org/packages/04/7c/fc6beb1e4a2d18ef11cc5e54f3176f9f7f2c0f154313e28462c77cb8059e/sphinx_codeautolink-0.20.0-py3-none-any.whl", hash = "sha256:185dcf5d00f6e983f3bb55fdfb5311e46c69e4e2e504581539216277473ee285", size = 37976, upload-time = "2026-11-08T10:34:37.769Z" }, ] [package.optional-dependencies] @@ -5127,7 +5127,6 @@ style = [ { name = "rich", extra = ["jupyter"] }, { name = "sphinx-api-relink" }, { name = "tensorwaves", extra = ["jax", "pwa"] }, - { name = "ty" }, { name = "types-pyyaml" }, { name = "types-requests" }, { name = "types-tensorflow" }, @@ -5292,7 +5291,6 @@ style = [ { name = "rich", extras = ["jupyter"] }, { name = "sphinx-api-relink" }, { name = "tensorwaves", extras = ["jax", "pwa"] }, - { name = "ty" }, { name = "types-pyyaml" }, { name = "types-requests" }, { name = "types-tensorflow" }, From d75daea6bc7971901c7418915890ec7fc37537ab Mon Sep 17 00:00:00 2001 From: GitHub Date: Mon, 9 Nov 2026 19:04:14 +0000 Subject: [PATCH 13/19] MAINT: upgrade lock files --- uv.lock | 88 ++++++++++++++++++++++++++++----------------------------- 1 file changed, 44 insertions(+), 44 deletions(-) diff --git a/uv.lock b/uv.lock index c86c81eb..81862fd5 100644 --- a/uv.lock +++ b/uv.lock @@ -3,22 +3,22 @@ revision = 5 requires-python = ">=3.11" resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] @@ -592,10 +592,10 @@ version = "1.3.3" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -682,16 +682,16 @@ version = "1.4.0" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1548,10 +1548,10 @@ version = "0.10.2" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1572,16 +1572,16 @@ version = "0.12.0.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1602,10 +1602,10 @@ version = "0.10.2" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1644,16 +1644,16 @@ version = "0.12.0.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -2796,10 +2796,10 @@ version = "2.4.6" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] sdist = { url = "https://files.pythonhosted.org/packages/d0/ad/fed0499ce6a338d2a03ebae59cd15093910c8875328855781952abf6c2fe/numpy-2.4.6.tar.gz", hash = "sha256:f3a3570c4a2a16746ac2c31a7c7c7b0c186b95ce902e33db6f28094ed7387dda", size = 20735807, upload-time = "2026-05-18T23:37:14.07Z" } @@ -2883,16 +2883,16 @@ version = "2.5.4" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] sdist = { url = "https://files.pythonhosted.org/packages/95/b0/c7453d0b6e2073c3264468b106ee1563750cecc910965e67357e3698c83e/numpy-2.5.4.tar.gz", hash = "sha256:9a94cf751c9ad8ebaa835bcd3d40dacf8534ad086b88c38029b65123c7999d2a", size = 20866315, upload-time = "2026-10-10T20:05:31.422Z" } @@ -4208,10 +4208,10 @@ version = "1.17.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -4287,16 +4287,16 @@ version = "1.18.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -4431,16 +4431,16 @@ version = "4.0.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", @@ -4457,10 +4457,10 @@ version = "9.0.4" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -4526,10 +4526,10 @@ version = "9.2.0" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", From f30c081c3328735a8eab2bb46f0920f18d64971d Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Mon, 9 Nov 2026 21:36:29 +0100 Subject: [PATCH 14/19] FIX: restore hosted CI checks --- .pre-commit-config.yaml | 2 ++ src/tensorwaves/data/phasespace.py | 12 +++++------- src/tensorwaves/optimizer/callbacks.py | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 1e0b2fb1..1598de74 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -19,6 +19,8 @@ repos: rev: 0.10.4 hooks: - id: check-dev-files + # Policy 0.10.4 imports TyperChoice from typer.main. + additional_dependencies: ["typer<0.29"] - repo: https://github.com/kynan/nbstripout rev: 0.9.1 diff --git a/src/tensorwaves/data/phasespace.py b/src/tensorwaves/data/phasespace.py index 18d1276f..3b482ed1 100644 --- a/src/tensorwaves/data/phasespace.py +++ b/src/tensorwaves/data/phasespace.py @@ -30,10 +30,9 @@ class TFPhaseSpaceGenerator(DataGenerator): """Implements a phase space generator using tensorflow. - Args: - initial_state_mass: Mass of the decaying state. final_state_masses: A mapping of - final state IDs to the corresponding masses. bunch_size: Size of a bunch that is - generated during a hit-and-miss iteration. + :param initial_state_mass: Mass of the decaying state. + :param final_state_masses: Masses keyed by final-state ID. + :param bunch_size: Number of candidates generated per hit-and-miss iteration. """ def __init__( @@ -91,9 +90,8 @@ class TFWeightedPhaseSpaceGenerator(DataGenerator): The weights are provided in the returned `.DataSample` under the key ``"weights"``. - Args: - initial_state_mass: Mass of the decaying state. final_state_masses: A mapping of - final state IDs to the corresponding masses. + :param initial_state_mass: Mass of the decaying state. + :param final_state_masses: Masses keyed by final-state ID. .. seealso:: diff --git a/src/tensorwaves/optimizer/callbacks.py b/src/tensorwaves/optimizer/callbacks.py index f5b675ac..2b9d5a1b 100644 --- a/src/tensorwaves/optimizer/callbacks.py +++ b/src/tensorwaves/optimizer/callbacks.py @@ -175,7 +175,7 @@ class TqdmProgressBar(Callback): """Display a ``tqdm`` progress bar during optimization. :param tqdm_kwargs: Keyword arguments forwarded to `tqdm - `_. + `_. """ def __init__(self, **tqdm_kwargs: Any) -> None: From 961201fe199b4afba95f4c73a826e30144c6a830 Mon Sep 17 00:00:00 2001 From: GitHub Date: Mon, 9 Nov 2026 20:41:37 +0000 Subject: [PATCH 15/19] MAINT: upgrade lock files --- .pre-commit-config.yaml | 4 +-- uv.lock | 58 ++++++++++++++++++++++++----------------- 2 files changed, 36 insertions(+), 26 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 1598de74..afddc4cc 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -16,7 +16,7 @@ repos: - id: check-useless-excludes - repo: https://github.com/ComPWA/policy - rev: 0.10.4 + rev: 0.10.5 hooks: - id: check-dev-files # Policy 0.10.4 imports TyperChoice from typer.main. @@ -142,7 +142,7 @@ repos: )$ - repo: https://github.com/astral-sh/ty-pre-commit - rev: v0.0.99 + rev: v0.0.100 hooks: - id: ty args: [--group=types, --no-default-groups] diff --git a/uv.lock b/uv.lock index 81862fd5..c6aec789 100644 --- a/uv.lock +++ b/uv.lock @@ -1420,14 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--- a/pyproject.toml +++ b/pyproject.toml @@ -642,7 +642,7 @@ key-empty = "off" [[tool.tombi.schemas]] root = "tool.compwa.policy" -path = "https://raw.githubusercontent.com/ComPWA/policy/0.10.4/compwa-policy.schema.json" +path = "https://raw.githubusercontent.com/ComPWA/policy/0.10.5/compwa-policy.schema.json" include = ["pyproject.toml"] [[tool.ty.overrides]] From 7fe3c35d4ca2f74f81f7fce6420463d1d06a8779 Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Mon, 9 Nov 2026 21:47:54 +0100 Subject: [PATCH 17/19] FIX: restore hosted CI checks --- benchmarks/unbinned_nll.py | 8 +- docs/amplitude-analysis.ipynb | 1 + pyproject.toml | 4 +- src/tensorwaves/data/__init__.py | 4 +- src/tensorwaves/function/sympy/_printer.py | 2 +- src/tensorwaves/interface.py | 10 +-- uv.lock | 88 +++++++++++----------- 7 files changed, 59 insertions(+), 58 deletions(-) diff --git a/benchmarks/unbinned_nll.py b/benchmarks/unbinned_nll.py index 1f8f6a5b..acdb55e5 100644 --- a/benchmarks/unbinned_nll.py +++ b/benchmarks/unbinned_nll.py @@ -296,10 +296,10 @@ def _benchmark_estimator_jax( parameters: dict[str, float], ) -> jax.Array: estimator = _create_estimator("jax", data, phsp) - estimator(parameters).block_until_ready() # ty: ignore[unresolved-attribute] + estimator(parameters).block_until_ready() # ty: ignore[missing-attribute] def run() -> jax.Array: - return estimator(parameters).block_until_ready() # ty: ignore[unresolved-attribute] + return estimator(parameters).block_until_ready() # ty: ignore[missing-attribute] return benchmark(run) @@ -311,10 +311,10 @@ def _benchmark_estimator_tensorflow( parameters: dict[str, float], ) -> np.ndarray: estimator = _create_estimator("tensorflow", data, phsp) - estimator(parameters).numpy() # ty: ignore[unresolved-attribute] + estimator(parameters).numpy() # ty: ignore[missing-attribute] def run() -> np.ndarray: - return estimator(parameters).numpy() # ty: ignore[unresolved-attribute] + return estimator(parameters).numpy() # ty: ignore[missing-attribute] return benchmark(run) diff --git a/docs/amplitude-analysis.ipynb b/docs/amplitude-analysis.ipynb index 33fa6d3c..800a7c73 100644 --- a/docs/amplitude-analysis.ipynb +++ b/docs/amplitude-analysis.ipynb @@ -1642,6 +1642,7 @@ }, "outputs": [], "source": [ + "assert fit_result.specifics is not None\n", "covariance_matrix = fit_result.specifics.covariance\n", "covariance_matrix.correlation()" ] diff --git a/pyproject.toml b/pyproject.toml index 28684728..60c55d78 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -665,7 +665,7 @@ include = [ ] [tool.ty.overrides.rules] -unresolved-attribute = "ignore" +missing-attribute = "ignore" [[tool.ty.overrides]] include = [ @@ -681,7 +681,7 @@ possibly-missing-attribute = "ignore" include = ["docs/usage.ipynb"] [tool.ty.overrides.rules] -invalid-method-override = "ignore" +incompatible-method-override = "ignore" [tool.ty.rules] division-by-zero = "warn" diff --git a/src/tensorwaves/data/__init__.py b/src/tensorwaves/data/__init__.py index b40faddb..83e440e9 100644 --- a/src/tensorwaves/data/__init__.py +++ b/src/tensorwaves/data/__init__.py @@ -136,8 +136,8 @@ def _generate_without_progress_bar( # https://github.com/ComPWA/tensorwaves/issues/395 show_progress = getattr(domain_generator, "show_progress", None) if show_progress is not None: - domain_generator.show_progress = False # ty:ignore[unresolved-attribute] + domain_generator.show_progress = False # ty:ignore[missing-attribute] domain = domain_generator.generate(bunch_size, rng) if show_progress is not None: - domain_generator.show_progress = show_progress # ty:ignore[unresolved-attribute] + domain_generator.show_progress = show_progress # ty:ignore[missing-attribute] return domain diff --git a/src/tensorwaves/function/sympy/_printer.py b/src/tensorwaves/function/sympy/_printer.py index 55798679..6a370a8d 100644 --- a/src/tensorwaves/function/sympy/_printer.py +++ b/src/tensorwaves/function/sympy/_printer.py @@ -50,7 +50,7 @@ def _forward_to_numpy_printer( def decorator(decorated_class: type[_T]) -> type[_T]: def _get_numpy_code(self: _T, expr: sp.Expr, *args: Any) -> str: - return expr._numpycode(self, *args) # ty:ignore[unresolved-attribute] + return expr._numpycode(self, *args) # ty:ignore[missing-attribute] for class_name in class_names: method_name = f"_print_{class_name}" diff --git a/src/tensorwaves/interface.py b/src/tensorwaves/interface.py index 23863a58..12b0beb2 100644 --- a/src/tensorwaves/interface.py +++ b/src/tensorwaves/interface.py @@ -82,7 +82,7 @@ class Estimator(Function[Mapping[str, ParameterValue], float]): """ @abstractmethod - def __call__(self, parameters: Mapping[str, ParameterValue]) -> float: # ty:ignore[invalid-method-override] + def __call__(self, parameters: Mapping[str, ParameterValue]) -> float: # ty:ignore[lost-keyword-for-regular-parameter] """Compute estimator value for this combination of parameter values.""" @abstractmethod @@ -125,7 +125,7 @@ class FitResult: :ref:`amplitude-analysis:Covariance matrix`. """ - @parameter_errors.validator # ty:ignore[unresolved-attribute] + @parameter_errors.validator # ty:ignore[missing-attribute] def _check_parameter_errors( self, _: attrs.Attribute, value: dict[str, ParameterValue] | None ) -> None: @@ -153,14 +153,14 @@ def _repr_pretty_(self, p: PrettyPrinter, cycle: bool) -> None: with p.group(indent=1, open="{"): for key, val in value.items(): p.breakable() - p.pretty(key) # ty:ignore[unresolved-attribute] + p.pretty(key) # ty:ignore[missing-attribute] p.text(": ") - p.pretty(val) # ty:ignore[unresolved-attribute] + p.pretty(val) # ty:ignore[missing-attribute] p.text(",") p.breakable() p.text("}") else: - p.pretty(value) # ty:ignore[unresolved-attribute] + p.pretty(value) # ty:ignore[missing-attribute] p.text(",") p.breakable() p.text(")") diff --git a/uv.lock b/uv.lock index c6aec789..e19bcc8d 100644 --- a/uv.lock +++ b/uv.lock @@ -3,22 +3,22 @@ revision = 5 requires-python = ">=3.11" resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] @@ -592,10 +592,10 @@ version = "1.3.3" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -682,16 +682,16 @@ version = "1.4.0" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1549,10 +1549,10 @@ version = "0.10.2" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1573,16 +1573,16 @@ version = "0.12.0.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1603,10 +1603,10 @@ version = "0.10.2" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1645,16 +1645,16 @@ version = "0.12.0.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -2806,10 +2806,10 @@ version = "2.4.6" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] sdist = { url = "https://files.pythonhosted.org/packages/d0/ad/fed0499ce6a338d2a03ebae59cd15093910c8875328855781952abf6c2fe/numpy-2.4.6.tar.gz", hash = "sha256:f3a3570c4a2a16746ac2c31a7c7c7b0c186b95ce902e33db6f28094ed7387dda", size = 20735807, upload-time = "2026-05-18T23:37:14.07Z" } @@ -2893,16 +2893,16 @@ version = "2.5.4" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] sdist = { url = "https://files.pythonhosted.org/packages/95/b0/c7453d0b6e2073c3264468b106ee1563750cecc910965e67357e3698c83e/numpy-2.5.4.tar.gz", hash = "sha256:9a94cf751c9ad8ebaa835bcd3d40dacf8534ad086b88c38029b65123c7999d2a", size = 20866315, upload-time = "2026-10-10T20:05:31.422Z" } @@ -4218,10 +4218,10 @@ version = "1.17.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -4297,16 +4297,16 @@ version = "1.18.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -4441,16 +4441,16 @@ version = "4.0.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", @@ -4467,10 +4467,10 @@ version = "9.0.4" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version < '3.11.5' and sys_platform == 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version < '3.11.5' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -4536,10 +4536,10 @@ version = "9.2.0" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version == '3.14.*' and sys_platform == 'win32'", "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version == '3.14.*' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", "python_full_version == '3.13.*' and sys_platform == 'emscripten'", From 7e9f8ad9bfe522ee351f936ed41ad7094b98f46e Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Mon, 9 Nov 2026 22:08:48 +0100 Subject: [PATCH 18/19] MAINT: upgrade lock files and workflow dependencies --- .github/workflows/cd.yml | 8 +-- .github/workflows/ci.yml | 6 +- .github/workflows/clean-caches.yml | 2 +- .github/workflows/lock.yml | 2 +- .github/workflows/pr-linting.yml | 2 +- uv.lock | 88 +++++++++++++++--------------- 6 files changed, 54 insertions(+), 54 deletions(-) diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml index bb261d66..2416d8a3 100644 --- a/.github/workflows/cd.yml +++ b/.github/workflows/cd.yml @@ -9,9 +9,9 @@ on: jobs: milestone: if: startsWith(github.ref, 'refs/tags') - uses: ComPWA/actions/.github/workflows/close-milestone.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 + uses: ComPWA/actions/.github/workflows/close-milestone.yml@a024afbb9e182bea4924a73fc60ae59462849ebb # v4.2.0 package-name: - uses: ComPWA/actions/.github/workflows/get-pypi-name.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 + uses: ComPWA/actions/.github/workflows/get-pypi-name.yml@a024afbb9e182bea4924a73fc60ae59462849ebb # v4.2.0 pypi: environment: name: PyPI @@ -24,10 +24,10 @@ jobs: id-token: write runs-on: ubuntu-24.04 steps: - - uses: ComPWA/actions/build-pypi-distribution@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 + - uses: ComPWA/actions/build-pypi-distribution@a024afbb9e182bea4924a73fc60ae59462849ebb # v4.2.0 - uses: pypa/gh-action-pypi-publish@7245906fb61fa33a13554f9d5fb856fe61758086 # v1.14.3 push: if: startsWith(github.ref, 'refs/tags') && !github.event.release.prerelease permissions: contents: write - uses: ComPWA/actions/.github/workflows/push-to-version-branches.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 + uses: ComPWA/actions/.github/workflows/push-to-version-branches.yml@a024afbb9e182bea4924a73fc60ae59462849ebb # v4.2.0 diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 3bd1b9c3..f6ac0a21 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -20,7 +20,7 @@ on: jobs: doc: - uses: ComPWA/actions/.github/workflows/ci-docs.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 + uses: ComPWA/actions/.github/workflows/ci-docs.yml@a024afbb9e182bea4924a73fc60ae59462849ebb # v4.2.0 permissions: pages: write id-token: write @@ -30,11 +30,11 @@ jobs: style: secrets: token: ${{ secrets.PAT }} - uses: ComPWA/actions/.github/workflows/style.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 + uses: ComPWA/actions/.github/workflows/style.yml@a024afbb9e182bea4924a73fc60ae59462849ebb # v4.2.0 with: python-version: "3.13" test: - uses: ComPWA/actions/.github/workflows/test.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 + uses: ComPWA/actions/.github/workflows/test.yml@a024afbb9e182bea4924a73fc60ae59462849ebb # v4.2.0 with: coverage-python-version: "3.13" macos-python-version: "3.11" diff --git a/.github/workflows/clean-caches.yml b/.github/workflows/clean-caches.yml index 0dc0bb85..319b5e2c 100644 --- a/.github/workflows/clean-caches.yml +++ b/.github/workflows/clean-caches.yml @@ -16,7 +16,7 @@ jobs: name: Remove caches runs-on: ubuntu-slim steps: - - uses: ComPWA/actions/clean-caches@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 + - uses: ComPWA/actions/clean-caches@a024afbb9e182bea4924a73fc60ae59462849ebb # v4.2.0 with: GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} ref: ${{ inputs.ref }} diff --git a/.github/workflows/lock.yml b/.github/workflows/lock.yml index 690d8ba8..cb8dbda4 100644 --- a/.github/workflows/lock.yml +++ b/.github/workflows/lock.yml @@ -17,6 +17,6 @@ on: jobs: lock: - uses: ComPWA/actions/.github/workflows/lock.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 + uses: ComPWA/actions/.github/workflows/lock.yml@a024afbb9e182bea4924a73fc60ae59462849ebb # v4.2.0 secrets: token: ${{ secrets.PAT }} diff --git a/.github/workflows/pr-linting.yml b/.github/workflows/pr-linting.yml index 4c8ad799..09b1088f 100644 --- a/.github/workflows/pr-linting.yml +++ b/.github/workflows/pr-linting.yml @@ -11,4 +11,4 @@ on: jobs: lint-pr: - uses: ComPWA/actions/.github/workflows/pr-linting.yml@826112415aa683bb2d73df87e84444a047f8cad7 # v4.1.8 + uses: ComPWA/actions/.github/workflows/pr-linting.yml@a024afbb9e182bea4924a73fc60ae59462849ebb # v4.2.0 diff --git a/uv.lock b/uv.lock index e19bcc8d..c6aec789 100644 --- a/uv.lock +++ b/uv.lock @@ -3,22 +3,22 @@ revision = 5 requires-python = ">=3.11" resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] @@ -592,10 +592,10 @@ version = "1.3.3" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -682,16 +682,16 @@ version = "1.4.0" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1549,10 +1549,10 @@ version = "0.10.2" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1573,16 +1573,16 @@ version = "0.12.0.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1603,10 +1603,10 @@ version = "0.10.2" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -1645,16 +1645,16 @@ version = "0.12.0.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -2806,10 +2806,10 @@ version = "2.4.6" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] sdist = { url = "https://files.pythonhosted.org/packages/d0/ad/fed0499ce6a338d2a03ebae59cd15093910c8875328855781952abf6c2fe/numpy-2.4.6.tar.gz", hash = "sha256:f3a3570c4a2a16746ac2c31a7c7c7b0c186b95ce902e33db6f28094ed7387dda", size = 20735807, upload-time = "2026-05-18T23:37:14.07Z" } @@ -2893,16 +2893,16 @@ version = "2.5.4" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] sdist = { url = "https://files.pythonhosted.org/packages/95/b0/c7453d0b6e2073c3264468b106ee1563750cecc910965e67357e3698c83e/numpy-2.5.4.tar.gz", hash = "sha256:9a94cf751c9ad8ebaa835bcd3d40dacf8534ad086b88c38029b65123c7999d2a", size = 20866315, upload-time = "2026-10-10T20:05:31.422Z" } @@ -4218,10 +4218,10 @@ version = "1.17.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'win32'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", - "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform == 'win32'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform == 'emscripten'", "python_full_version < '3.11.5' and sys_platform == 'emscripten'", + "python_full_version >= '3.11.5' and python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version < '3.11.5' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ @@ -4297,16 +4297,16 @@ version = "1.18.1" source = { registry = "https://pypi.org/simple" } resolution-markers = [ "python_full_version >= '3.15' and sys_platform == 'win32'", - "python_full_version >= '3.15' and sys_platform == 'emscripten'", - "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform == 'win32'", + "python_full_version >= '3.15' and sys_platform == 'emscripten'", "python_full_version == '3.14.*' and sys_platform == 'emscripten'", + "python_full_version >= '3.15' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.14.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] dependencies = [ 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