From 80bd3bb3f661d720e4d36b81bfde21a7563b4337 Mon Sep 17 00:00:00 2001 From: dylanyang Date: Mon, 9 Nov 2026 22:07:30 +0900 Subject: [PATCH] README: cluster-mate auditing is merged (#39) The audit paragraph still described #39 as pending. --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 86e0acb..3da2e1d 100644 --- a/README.md +++ b/README.md @@ -231,9 +231,9 @@ rfoldsearch attach-calibration --db target_nr80.pt \ Fitting audits high-scoring cluster leaders with US-align, excludes structurally related members, and refits the model with replacement leaders until no qualifying unaudited leaders remain. -Pending [PR #39](https://github.com/DylanYang/RFoldSearch/pull/39), eligible -unaudited members of a flagged leader's cluster within the current `E0` ceiling -will be checked together to reduce repeated fitting for large clusters. +When a leader is flagged, the eligible unaudited members of its cluster within +the current `E0` ceiling are checked in the same round, so a large related +cluster does not need one refit per member. An interrupted fit reuses cached audits from `--workdir`, and precomputed scores or TM-scores can be supplied (see `--help`).