From eba215c2ac2493680e14503fa953bc32977f54f4 Mon Sep 17 00:00:00 2001 From: Jenny Anak Empawi Date: Fri, 9 Oct 2026 11:01:23 -0400 Subject: [PATCH 1/2] Add leafcutter2 to full package list --- envs/full_packages.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/envs/full_packages.txt b/envs/full_packages.txt index 14a7196..1193cf7 100644 --- a/envs/full_packages.txt +++ b/envs/full_packages.txt @@ -32,6 +32,7 @@ gzip htslib king kent-tools +leafcutter2 less macs2 metal From a118401bc04844b85fff365bba1178f3acce32b8 Mon Sep 17 00:00:00 2001 From: Daniel Nachun Date: Fri, 9 Oct 2026 22:24:15 -0500 Subject: [PATCH 2/2] fix url path --- .github/workflows/ci.yml | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index a7f3c2f..3a14f75 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -34,6 +34,7 @@ jobs: env: INSTALL_TYPE: full run: | - sed -i "s?main?${{ github.event.pull_request.head.ref }}?g" pixi-setup.sh - sed -i "s?init.sh | bash?init.sh | sed 's,main,${{ github.event.pull_request.head.ref }},g' | bash?" pixi-setup.sh + REPO_REF="${{ github.event.pull_request.head.repo.full_name }}/${{ github.event.pull_request.head.ref }}" + sed -i "s?StatFunGen/pixi-setup/main?${REPO_REF}?g" pixi-setup.sh + sed -i "s?init.sh | bash?init.sh | sed 's,StatFunGen/pixi-setup/main,${REPO_REF},g' | bash?" pixi-setup.sh printf "\n1\n" | ./pixi-setup.sh