Issues

• quality binning

  ZSI-Bio/bdg-sequila#205 · Filter by author agaszmurlo opened on Aug 14, 2020

• Invitation to collaborate on ADAM, bgd-formats, Disq

  ZSI-Bio/bdg-sequila#152 · Filter by author heuermh opened on Oct 14, 2019
  2

• update documetation on web page

  ZSI-Bio/bdg-sequila#149 · Filter by author mwiewior opened on Apr 26, 2019
  

• Wrong coverage calculation when sample is split in many files not a single BAM

  ZSI-Bio/bdg-sequila#128 · Filter by author mwiewior opened on Nov 1, 2018

• Remove algo selection from bdg_coverage

  ZSI-Bio/bdg-sequila#121 · Filter by author mwiewior opened on Aug 29, 2018 · 0.4.1

• Optimize CTAS/IAS to get rid of intermediate records serialization

  enhancement
  ZSI-Bio/bdg-sequila#114 · Filter by author mwiewior opened on Aug 14, 2018 · 0.5.0

• add predicate pushdow for readBAMFile method as well

  bug
  ZSI-Bio/bdg-sequila#112 · Filter by author mwiewior opened on Aug 12, 2018 · 0.4.1
  

• Intel GKL support for BAM writing

  enhancement
  ZSI-Bio/bdg-sequila#111 · Filter by author mwiewior opened on Aug 11, 2018

• BAM Sparser

  enhancement
  ZSI-Bio/bdg-sequila#109 · Filter by author mwiewior opened on Aug 9, 2018

• Link performance highlights to the benchmark/api sections in landing page

  documentationenhancement
  ZSI-Bio/bdg-sequila#108 · Filter by author mwiewior opened on Aug 8, 2018 · 0.4.1

• Review code and check extract SAMHeaderReader.VALIDATION_STRINGENCY_PROPERTY as param

  enhancement
  ZSI-Bio/bdg-sequila#106 · Filter by author mwiewior opened on Aug 7, 2018 · 0.4.1
  1

  

• Store sample stats as a table meta to speed up some queries

  enhancement
  ZSI-Bio/bdg-sequila#104 · Filter by author mwiewior opened on Aug 6, 2018

• add fine grained upersisting

  ZSI-Bio/bdg-sequila#101 · Filter by author mwiewior opened on Aug 2, 2018 · 0.4.1

• coverage for a fixed window length - eg 500bp

  ZSI-Bio/bdg-sequila#99 · Filter by author mwiewior opened on Aug 1, 2018 · 0.4.1
  

• Per base cov tester for 2 coverage dataframes

  ZSI-Bio/bdg-sequila#98 · Filter by author mwiewior opened on Aug 1, 2018 · 0.4.1
  1

  

• BAM column mapping review and adding columns useful for filtering

  ZSI-Bio/bdg-sequila#96 · Filter by author mwiewior opened on Aug 1, 2018 · 0.4.1

• Add support for spark-bam and hadoop-bam( sequila global param)

  ZSI-Bio/bdg-sequila#94 · Filter by author mwiewior opened on Aug 1, 2018 · 0.4.1
  

• confirm bdg_coverage results with mosdepth/samtools

  ZSI-Bio/bdg-sequila#93 · Filter by author mwiewior opened on Aug 1, 2018 · 0.4.1

• PP for interval join with BAMDataSource

  question
  ZSI-Bio/bdg-sequila#89 · Filter by author mwiewior opened on Jul 25, 2018

• Better error handling if start> end in data used for joining

  ZSI-Bio/bdg-sequila#87 · Filter by author mwiewior opened on Jul 17, 2018

• Migrate hadoop-bam to spark-bam

  ZSI-Bio/bdg-sequila#83 · Filter by author mwiewior opened on Jun 1, 2018 · 0.5.0
  1

  

• Remove version file from docker dir - it's no longer used

  enhancement
  ZSI-Bio/bdg-sequila#64 · Filter by author mwiewior opened on Apr 11, 2018 · 0.4.1
  

• Add a short description at docker hub + intro section in the documentation - what our project is all about

  ZSI-Bio/bdg-sequila#56 · Filter by author mwiewior opened on Mar 28, 2018

• Unify column names BAM and ADAM datasource

  bug
  ZSI-Bio/bdg-sequila#52 · Filter by author mwiewior opened on Mar 26, 2018 · 0.4.1
  2

• BAMDataSource add more columns

  ZSI-Bio/bdg-sequila#47 · Filter by author mwiewior opened on Mar 22, 2018