Issues

• automatic retrieval of references from genomes_base broken

  bug
  nf-cmgg/structural#131 · Filter by author mvheetve opened on Apr 15, 2026

• Integration of SMNCopyNumberCaller

  enhancementpriority
  nf-cmgg/structural#128 · Filter by author ToonRosseel opened on Feb 6, 2026

• Variant prioritization: CADD-SV

  enhancementpriority
  nf-cmgg/structural#127 · Filter by author nvnieuwk opened on Jan 15, 2026

• gtf option needs a dynamic default

  bug
  nf-cmgg/structural#121 · Filter by author mvheetve opened on Oct 7, 2025

• Investigae the use of dysgu

  enhancement
  nf-cmgg/structural#113 · Filter by author nvnieuwk opened on Jun 24, 2025

• Automatically check if the VEP cache contains a merged cache

  enhancement
  nf-cmgg/structural#92 · Filter by author nvnieuwk opened on May 29, 2024 · 0.2.0

• Some bugs found the output of the pipeline

  bug
  nf-cmgg/structural#88 · Filter by author nvnieuwk opened on Apr 26, 2024 · 0.2.0
  1

• Vcfanno annotate gene panel overlaps

  enhancement
  nf-cmgg/structural#71 · Filter by author nvnieuwk opened on Feb 27, 2024

• Fully support conda for all modules

  bug
  nf-cmgg/structural#70 · Filter by author nvnieuwk opened on Jan 25, 2024 · 1.0.0

• include gnomADv4 SV annotation

  enhancement
  nf-cmgg/structural#66 · Filter by author mvheetve opened on Nov 30, 2023 · 1.0.0

• Investigate VDS format for the creation of a false positive variants list

  enhancement
  nf-cmgg/structural#65 · Filter by author nvnieuwk opened on Nov 30, 2023 · 1.1.0

• Add VCF to JSON conversion

  enhancement
  nf-cmgg/structural#60 · Filter by author nvnieuwk opened on Nov 20, 2023 · 1.0.0
  4

• Investigate stranger for repeat expansion annotation

  enhancementpriority
  nf-cmgg/structural#53 · Filter by author nvnieuwk opened on Oct 25, 2023 · 1.1.0
  

• Add validation

  enhancement
  nf-cmgg/structural#51 · Filter by author nvnieuwk opened on Oct 3, 2023 · 1.1.0
  1

• New caller: svaba

  enhancement
  nf-cmgg/structural#48 · Filter by author nvnieuwk opened on Jun 12, 2023 · 1.1.0

• tune SVcaller parameters

  nf-cmgg/structural#44 · Filter by author nvnieuwk opened on May 24, 2023 · 1.1.0
  

• re-add gridss support

  enhancement
  nf-cmgg/structural#39 · Filter by author nvnieuwk opened on May 3, 2023 · 1.1.0
  1

• Add MEI support

  enhancement
  nf-cmgg/structural#36 · Filter by author nvnieuwk opened on Apr 26, 2023 · 1.1.0
  3

• Finish Scramble

  enhancement
  nf-cmgg/structural#9 · Filter by author nvnieuwk opened on Oct 6, 2022 · 1.1.0
  1