Issues

• Failed to output jsons for htmls with tables which are presented as images inside the main text.

  bug
  omicsNLP/Auto-CORPus#409 · Filter by author mdrishti opened on Sep 30, 2026

• Create try_get_text helper function in parse_xml

  omicsNLP/Auto-CORPus#287 · Filter by author AdrianDAlessandro opened on Jun 3, 2025

• Reduce duplicated code between the if and else branches in parse_xml

  omicsNLP/Auto-CORPus#286 · Filter by author AdrianDAlessandro opened on Jun 3, 2025

• Functions for checks and cleaning in parse_xml

  omicsNLP/Auto-CORPus#285 · Filter by author AdrianDAlessandro opened on Jun 3, 2025

• _merge_tables_with_empty_tables is never tested

  omicsNLP/Auto-CORPus#278 · Filter by author AdrianDAlessandro opened on Jun 2, 2025

• Use the ac_bioc dataclasses in main AC code

  omicsNLP/Auto-CORPus#275 · Filter by author AdrianDAlessandro opened on May 29, 2025

• Split convert_xml_to_json into smaller functions

  omicsNLP/Auto-CORPus#274 · Filter by author AdrianDAlessandro opened on May 29, 2025
  1

  

• BioCJSONEncoder does not match to_dict methods in dataclasses

  bug
  omicsNLP/Auto-CORPus#272 · Filter by author AdrianDAlessandro opened on May 29, 2025 · v1.2.0

• Do not output to files when running tests

  omicsNLP/Auto-CORPus#257 · Filter by author AdrianDAlessandro opened on May 20, 2025

• CI: Add link checker workflow

  omicsNLP/Auto-CORPus#231 · Filter by author alexdewar opened on Apr 25, 2025

• Simplify section.read_mapping_file

  omicsNLP/Auto-CORPus#202 · Filter by author AdrianDAlessandro opened on Apr 2, 2025

• Include test to confirm same output from XML and HTML processing

  enhancement
  omicsNLP/Auto-CORPus#196 · Filter by author AdrianDAlessandro opened on Mar 28, 2025 · v1.2.0
  2

• Make filepaths absolute before writing to output files

  omicsNLP/Auto-CORPus#193 · Filter by author alexdewar opened on Mar 27, 2025 · v1.2.0

• Clean up __merge_table_data

  omicsNLP/Auto-CORPus#191 · Filter by author alexdewar opened on Mar 27, 2025 · v1.2.1

• Process text in images of tables

  enhancement
  omicsNLP/Auto-CORPus#173 · Filter by author alexdewar opened on Mar 25, 2025
  6

• Fix warnings in docs build

  omicsNLP/Auto-CORPus#171 · Filter by author AdrianDAlessandro opened on Mar 25, 2025 · Documentation

• Assign headings using DAG model

  enhancement
  omicsNLP/Auto-CORPus#169 · Filter by author alexdewar opened on Mar 25, 2025

• Table cells containing unicode dash counted as non-empty

  bug
  omicsNLP/Auto-CORPus#157 · Filter by author alexdewar opened on Mar 20, 2025 · v1.2.1

• Validate input config files

  enhancement
  omicsNLP/Auto-CORPus#145 · Filter by author alexdewar opened on Mar 17, 2025 · v1.2.1

• Change underscores to hyphens in command-line flags

  omicsNLP/Auto-CORPus#140 · Filter by author alexdewar opened on Mar 14, 2025 · v1.2.0
  4

• Convert remaining numpy-style docstrings to Google style

  omicsNLP/Auto-CORPus#139 · Filter by author alexdewar opened on Mar 14, 2025 · Documentation

• Add docstrings to private functions and enable warnings

  omicsNLP/Auto-CORPus#135 · Filter by author alexdewar opened on Mar 14, 2025 · Documentation

• Audit documentation and program help

  omicsNLP/Auto-CORPus#132 · Filter by author alexdewar opened on Mar 14, 2025 · Documentation

• Make exception handling more consistent and robust throughout codebase

  omicsNLP/Auto-CORPus#131 · Filter by author alexdewar opened on Mar 14, 2025 · v1.2.1
  1

• Perform abstract classification

  enhancement
  omicsNLP/Auto-CORPus#120 · Filter by author Antoinelfr opened on Mar 10, 2025 · v1.3.0