diff --git a/.nf-core.yml b/.nf-core.yml index 1be1b4e..effec91 100644 --- a/.nf-core.yml +++ b/.nf-core.yml @@ -38,4 +38,4 @@ template: - igenomes - multiqc - fastqc - version: 1.2.1 + version: 1.2.2 diff --git a/CHANGELOG.md b/CHANGELOG.md index 4fbe99d..46a5eb9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,12 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## [[1.2.2](https://github.com/sanger-tol/sequencecomposition/releases/tag/1.2.2)] – Easter Bells (patch 2) – [2026-08-03] + +### Enhancements & fixes + +- Increased runtime rule to allow runs on large genomes + ## [[1.2.1](https://github.com/sanger-tol/sequencecomposition/releases/tag/1.2.1)] – Easter Bells (patch 1) – [2026-05-15] ### Enhancements & fixes diff --git a/CITATION.cff b/CITATION.cff index e6f79c3..0a39566 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -29,7 +29,7 @@ license: MIT message: If you use this software, please cite it using the metadata from this file and all references from CITATIONS.md . repository-code: https://github.com/sanger-tol/sequencecomposition -title: sanger-tol/sequencecomposition v1.2.1 - Easter Bells (patch 1) +title: sanger-tol/sequencecomposition v1.2.2 - Easter Bells (patch 2) type: software url: https://pipelines.tol.sanger.ac.uk/sequencecomposition -version: 1.2.1 +version: 1.2.2 diff --git a/conf/base.config b/conf/base.config index e99c0f4..d6a4a59 100644 --- a/conf/base.config +++ b/conf/base.config @@ -14,7 +14,7 @@ process { cpus = 1 // but still gradually increase the resources to allow the pipeline to self-heal memory = { 50.MB * task.attempt } - time = { 30.min * task.attempt } + time = { 60.min * task.attempt } // tabix needs pointers to the sequences in memory withName: BGZIPTABIX { diff --git a/nextflow.config b/nextflow.config index 275d541..10b6a1c 100644 --- a/nextflow.config +++ b/nextflow.config @@ -264,7 +264,7 @@ manifest { mainScript = 'main.nf' defaultBranch = 'main' nextflowVersion = '!>=25.04.0' - version = '1.2.1' + version = '1.2.2' doi = '10.5281/zenodo.14358108' } diff --git a/ro-crate-metadata.json b/ro-crate-metadata.json index e0b46f2..c8d63f5 100644 --- a/ro-crate-metadata.json +++ b/ro-crate-metadata.json @@ -124,7 +124,7 @@ } ], "dateCreated": "", - "dateModified": "2026-04-12T12:38:28Z", + "dateModified": "2026-08-03T15:53:07Z", "dct:conformsTo": "https://bioschemas.org/profiles/ComputationalWorkflow/1.0-RELEASE/", "image": { "@id": "docs/images/sanger-tol-sequencecomposition_metro_map_dark.png" @@ -156,10 +156,10 @@ }, "url": [ "https://github.com/sanger-tol/sequencecomposition", - "https://pipelines.tol.sanger.ac.uk//sequencecomposition/1.2.0/" + "https://pipelines.tol.sanger.ac.uk//sequencecomposition/1.2.2/" ], "version": [ - "1.2.0" + "1.2.2" ] }, { @@ -325,4 +325,4 @@ "url": "https://pipelines.tol.sanger.ac.uk/" } ] -} \ No newline at end of file +} diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap index 62fb52c..5ff20cf 100644 --- a/tests/default.nf.test.snap +++ b/tests/default.nf.test.snap @@ -21,7 +21,7 @@ "samtools": "1.23.1" }, "Workflow": { - "sanger-tol/sequencecomposition": "v1.2.1" + "sanger-tol/sequencecomposition": "v1.2.2" } }, [ @@ -178,4 +178,4 @@ "nextflow": "25.10.2" } } -} \ No newline at end of file +} diff --git a/tests/samplesheet.nf.test.snap b/tests/samplesheet.nf.test.snap index edbfe99..99e1991 100644 --- a/tests/samplesheet.nf.test.snap +++ b/tests/samplesheet.nf.test.snap @@ -21,7 +21,7 @@ "samtools": "1.23.1" }, "Workflow": { - "sanger-tol/sequencecomposition": "v1.2.1" + "sanger-tol/sequencecomposition": "v1.2.2" } }, [ @@ -180,4 +180,4 @@ "nextflow": "25.10.2" } } -} \ No newline at end of file +}