diff --git a/CITATION.cff b/CITATION.cff index cb3dd70..cb4f760 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -8,7 +8,7 @@ message: 'To cite package "composableIDModelR" in publications use:' type: software license: MIT title: 'composableIDModelR: Composable Infectious Disease Models via ''ComposableTuringIDModels.jl''' -version: 0.2.0.9000 +version: 0.3.0.9000 abstract: Provides an R interface to 'ComposableTuringIDModels.jl', the composable probabilistic infectious disease modelling package of the 'EpiAware' ecosystem. Models are assembled in R from reusable latent process, infection and observation @@ -39,6 +39,129 @@ references: year: '2026' doi: 10.32614/R.manuals version: '>= 4.1.0' +- type: software + title: checkmate + abstract: 'checkmate: Fast and Versatile Argument Checks' + notes: Imports + url: https://mllg.github.io/checkmate/ + repository: https://CRAN.R-project.org/package=checkmate + authors: + - family-names: Lang + given-names: Michel + email: michellang@gmail.com + orcid: https://orcid.org/0000-0001-9754-0393 + year: '2026' + doi: 10.32614/CRAN.package.checkmate +- type: software + title: distspec + abstract: 'distspec: Probability Distributions with Certain or Uncertain Parameters' + notes: Imports + url: https://epiforecasts.io/distspec/ + repository: https://CRAN.R-project.org/package=distspec + authors: + - family-names: Funk + given-names: Sebastian + email: sebastian.funk@lshtm.ac.uk + orcid: https://orcid.org/0000-0002-2842-3406 + - family-names: Azam + given-names: James M. + email: james.azam@lshtm.ac.uk + orcid: https://orcid.org/0000-0001-5782-7330 + - family-names: Abbott + given-names: Sam + email: sam.abbott@lshtm.ac.uk + orcid: https://orcid.org/0000-0001-8057-8037 + year: '2026' + doi: 10.32614/CRAN.package.distspec + version: '>= 0.2.0' +- type: software + title: ggplot2 + abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics' + notes: Imports + url: https://ggplot2.tidyverse.org + repository: https://CRAN.R-project.org/package=ggplot2 + authors: + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + orcid: https://orcid.org/0000-0003-4757-117X + - family-names: Chang + given-names: Winston + orcid: https://orcid.org/0000-0002-1576-2126 + - family-names: Henry + given-names: Lionel + - family-names: Pedersen + given-names: Thomas Lin + email: thomas.pedersen@posit.co + orcid: https://orcid.org/0000-0002-5147-4711 + - family-names: Takahashi + given-names: Kohske + - family-names: Wilke + given-names: Claus + orcid: https://orcid.org/0000-0002-7470-9261 + - family-names: Woo + given-names: Kara + orcid: https://orcid.org/0000-0002-5125-4188 + - family-names: Yutani + given-names: Hiroaki + orcid: https://orcid.org/0000-0002-3385-7233 + - family-names: Dunnington + given-names: Dewey + orcid: https://orcid.org/0000-0002-9415-4582 + - family-names: Brand + given-names: Teun + name-particle: van den + orcid: https://orcid.org/0000-0002-9335-7468 + year: '2026' + doi: 10.32614/CRAN.package.ggplot2 +- type: software + title: juliabridge + abstract: 'juliabridge: Bridge R Packages to Julia' + notes: Imports + url: https://epiforecasts.io/juliabridge/ + authors: + - family-names: Funk + given-names: Sebastian + email: sebastian.funk@lshtm.ac.uk + orcid: https://orcid.org/0000-0002-2842-3406 + year: '2026' + version: '>= 0.1.0' +- type: software + title: posterior + abstract: 'posterior: Tools for Working with Posterior Distributions' + notes: Imports + url: https://mc-stan.org/posterior/ + repository: https://CRAN.R-project.org/package=posterior + authors: + - family-names: Bürkner + given-names: Paul-Christian + email: paul.buerkner@gmail.com + - family-names: Gabry + given-names: Jonah + email: jgabry@gmail.com + - family-names: Kay + given-names: Matthew + email: mjskay@northwestern.edu + - family-names: Vehtari + given-names: Aki + email: Aki.Vehtari@aalto.fi + year: '2026' + doi: 10.32614/CRAN.package.posterior +- type: software + title: rlang + abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features' + notes: Imports + url: https://rlang.r-lib.org + repository: https://CRAN.R-project.org/package=rlang + authors: + - family-names: Henry + given-names: Lionel + email: lionel@posit.co + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + year: '2026' + doi: 10.32614/CRAN.package.rlang - type: software title: stats abstract: 'R: A Language and Environment for Statistical Computing' @@ -52,4 +175,74 @@ references: address: Vienna, Austria year: '2026' doi: 10.32614/R.manuals +- type: software + title: knitr + abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R' + notes: Suggests + url: https://yihui.org/knitr/ + repository: https://CRAN.R-project.org/package=knitr + authors: + - family-names: Xie + given-names: Yihui + email: xie@yihui.name + orcid: https://orcid.org/0000-0003-0645-5666 + year: '2026' + doi: 10.32614/CRAN.package.knitr +- type: software + title: rmarkdown + abstract: 'rmarkdown: Dynamic Documents for R' + notes: Suggests + url: https://pkgs.rstudio.com/rmarkdown/ + repository: https://CRAN.R-project.org/package=rmarkdown + authors: + - family-names: Allaire + given-names: JJ + email: jj@posit.co + - family-names: Xie + given-names: Yihui + email: xie@yihui.name + orcid: https://orcid.org/0000-0003-0645-5666 + - family-names: Dervieux + given-names: Christophe + email: cderv@posit.co + orcid: https://orcid.org/0000-0003-4474-2498 + - family-names: McPherson + given-names: Jonathan + email: jonathan@posit.co + - family-names: Luraschi + given-names: Javier + - family-names: Ushey + given-names: Kevin + email: kevin@posit.co + - family-names: Atkins + given-names: Aron + email: aron@posit.co + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + - family-names: Cheng + given-names: Joe + email: joe@posit.co + - family-names: Chang + given-names: Winston + email: winston@posit.co + - family-names: Iannone + given-names: Richard + email: rich@posit.co + orcid: https://orcid.org/0000-0003-3925-190X + year: '2026' + doi: 10.32614/CRAN.package.rmarkdown +- type: software + title: testthat + abstract: 'testthat: Unit Testing for R' + notes: Suggests + url: https://testthat.r-lib.org + repository: https://CRAN.R-project.org/package=testthat + authors: + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + year: '2026' + doi: 10.32614/CRAN.package.testthat + version: '>= 3.2.0'