Issues

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  shenorrLabTRDF/bseqsc#18 · Filter by author abulislam opened on May 21, 2023

• Error in out[[t]]$coefs

  shenorrLabTRDF/bseqsc#17 · Filter by author Li-Rui091 opened on Aug 15, 2022

• CIBERSORTx

  shenorrLabTRDF/bseqsc#15 · Filter by author wibll opened on Jan 12, 2021

• How to normalize and calculate the gene expression of bulk RNA seq and scRNA seq？

  shenorrLabTRDF/bseqsc#14 · Filter by author byb-paper opened on Nov 9, 2020

• Error Running CIBERSORT to estimate proportion

  shenorrLabTRDF/bseqsc#13 · Filter by author soleilll opened on Aug 27, 2020
  1

• DEseq with bseqsc package

  shenorrLabTRDF/bseqsc#12 · Filter by author nfancy opened on Oct 29, 2019

• Model is empty!

  shenorrLabTRDF/bseqsc#11 · Filter by author Kai6662 opened on Oct 29, 2019
  3

• Error in array(NA_real_, dim = c(nrow(b), ncol(cc), length(lev)), dimnames = c(rownames(b), : length of 'dimnames' [1686] must match that of 'dims' [3]

  shenorrLabTRDF/bseqsc#10 · Filter by author charlesgwellem opened on Aug 29, 2019
  2

• Error in dimnames(covmat.unscaled) <- list(xnames, xnames) : length of 'dimnames' [1] not equal to array extent

  shenorrLabTRDF/bseqsc#9 · Filter by author charlesgwellem opened on Aug 6, 2019

• Error in mutate(edger_pvals, Regulated = Adjusted <= 0.01 & Adjusted <= : could not find function "mutate"

  shenorrLabTRDF/bseqsc#8 · Filter by author deo999 opened on Feb 10, 2019
  2

• Can't find processed datasets

  shenorrLabTRDF/bseqsc#7 · Filter by author muntahafsamad opened on Jan 27, 2019
  1

• pre-processing of scRNA-seq and bulk RNA-seq

  shenorrLabTRDF/bseqsc#6 · Filter by author InesdeSantiago opened on Sep 18, 2018

• request CIBERSORT.R for BSeq-sc installation

  shenorrLabTRDF/bseqsc#4 · Filter by author xndless opened on Jul 23, 2018

• the number of coefficients (proportions of cell types) in extended model

  shenorrLabTRDF/bseqsc#3 · Filter by author gurkanbal opened on Jun 1, 2017
  4

• Get access to the bseq-sc code

  shenorrLabTRDF/bseqsc#1 · Filter by author jperales opened on Jan 11, 2017
  8