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[fix + enhancement] Improve handling of filemode changes #5072

Job	Run time
Prepare version string	5s
Build / Build Linux	3m 34s
Build / Build Linux (arm64)	3m 48s
Build / Build macOS (Apple Silicon)	3m 20s
Build / Build macOS (Intel)	4m 24s
Build / Build Windows ARM64	3m 20s
Build / Build Windows x64	3m 51s
Package / Package macOS (osx-x64)	22s
Package / Package Windows (win-arm64)	29s
Package / Package Windows (win-x64)	28s
Package / Package Linux (linux-x64)	57s
Package / Package Linux (linux-arm64)	52s
Package / Package macOS (osx-arm64)	21s
	25m 51s