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Phase II progress

Agent 2 expansion track. Labels match code on disk.

Workstream Status Notes
A Docs + GitHub community PARTIAL → largely filled .github/ present; core status docs present; tutorials/guides still expanding
B Provenance / quality / compare / research IMPLEMENTED Modules + tests
C Plugin SDK / diagnostics / audit IMPLEMENTED / PARTIAL SDK + doctor done; repo_audit pending polish
D Testing IMPLEMENTED Agent 2 test packages under tests/
E Integration with Agent 1 PARTIAL CLI uses Analyzer/SessionStore; no core overwrites

Empty-folder remediation (this turn)

Previously empty packages under src/botscope/ (cli, demo, gui, notebook, plugins/sdk) and empty examples/, datasets/demo, test dirs were filled with real modules, runnable examples, and tests. Additional packages capture, enrich, behavior, flows, estimation, datasets added with honest PARTIAL/EXPERIMENTAL/RESEARCH status.