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Add biotite-tools#607

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prihoda:biotite-tools
Open

Add biotite-tools#607
prihoda wants to merge 1 commit into
BioContainers:masterfrom
prihoda:biotite-tools

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@prihoda

@prihoda prihoda commented Oct 4, 2025

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Add biotite-tools container that packages biotite and related packages for analyzing protein structures:

  • biopython
  • pandas
  • biopandas
  • scipy
  • fastcluster

This container can be used for example for analyzing protein structure interfaces evaluating de novo designed structures.

Checklist

  1. Misc
  • My tool doesn't exist in BioConda
  • The image can be built
  1. Metadata
  • LABEL base_image
  • LABEL version
  • LABEL software.version
  • LABEL about.summary
  • LABEL about.home
  • LABEL about.license
  • MAINTAINER
  1. Extra (optionals)
  • I have written tests in test-cmds.txt
  • LABEL extra.identifier
  • LABEL about.documentation
  • LABEL about.tags

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Pull request overview

This PR adds a new biotite-tools container image intended to bundle Biotite and a small set of Python packages for protein structure analysis workflows.

Changes:

  • Introduces biotite-tools/1.4.0/Dockerfile based on biocontainers/biocontainers:v1.0.0_cv4.
  • Installs Biotite 1.4.0 and several related Python packages via conda from conda-forge.
  • Adds standard BioContainers-style metadata labels for the image.

Comment on lines +21 to +28
RUN conda install -c conda-forge \
"biotite==1.4.0" \
"biopython>=1.85" \
"biopandas>=0.5.1" \
"scipy>=1.16.2" \
"fastcluster>=1.3.0" \
"einops>=0.8.1" \
&& conda clean -a -y
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2 participants