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Configure ci/cd - #136

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nsyzrantsev wants to merge 64 commits into

mainfrom

add-ci-cd

Open

Configure ci/cd#136
nsyzrantsev wants to merge 64 commits into
mainfrom
add-ci-cd

Commits on Aug 9, 2025
- Add ci/cd and port fastp on arm64
  Nikita Syzrantsev
  committed
  085fc05
- Update docker-multiarch.yml
  nsyzrantsev
  committed
  df236c6
- Update docker-multiarch.yml
  nsyzrantsev
  committed
  47014d1
- Update docker-multiarch.yml
  nsyzrantsev
  committed
  117102c
- Update docker-multiarch.yml
  nsyzrantsev
  committed
  557967f
- Update docker-multiarch.yml
  nsyzrantsev
  committed
  8687335
- Update docker-multiarch.yml
  nsyzrantsev
  committed
  37d2496
- Update docker-multiarch.yml
  nsyzrantsev
  committed
  a6e5d70
- Update docker-multiarch.yml
  nsyzrantsev
  committed
  1a26bdd
- Update docker-multiarch.yml
  nsyzrantsev
  committed
  7354660
- Update docker-multiarch.yml
  nsyzrantsev
  committed
  074adf7
- Update docker-multiarch.yml
  nsyzrantsev
  committed
  2e3003b
- Disable provenance and sbom for amd64 and arm64 stages
  nsyzrantsev
  committed
  c4db2b8
- Remove type=ref,event=branch
  nsyzrantsev
  committed
  6ebc302
- Build if image version does not exist in ghcr
  nsyzrantsev
  committed
  318757e
- Fix runs-on image for build_arm64
  nsyzrantsev
  committed
  7fbf926
- Fix rule to build new images
  nsyzrantsev
  committed
  48efa39
- Fix rule to build new images
  nsyzrantsev
  committed
  367b76d
- Fix IMAGE_PREFIX
  nsyzrantsev
  committed
  c649833
- Apply lowercase for image uri
  nsyzrantsev
  committed
  f0bcf9f
- Build multi-arch vidjil and igblast
  nsyzrantsev
  committed
  b6ce27a
- Build multi-arch vidjil and igblast
  nsyzrantsev
  committed
  21247fc
- Update build cd config
  nsyzrantsev
  committed
  ea32e81
- Update build cd template
  nsyzrantsev
  committed
  a6dc74f
- Update build cd template
  nsyzrantsev
  committed
  c239910
- Fix decide job outputs saving
  nsyzrantsev
  committed
  d4c6ca7
- Fix decide job outputs saving
  nsyzrantsev
  committed
  fcd3ae2
- Fix decide job outputs saving
  nsyzrantsev
  committed
  e07c1d3
- Fix decide job outputs saving
  nsyzrantsev
  committed
  e50594a
- Add additional logs
  nsyzrantsev
  committed
  b40d76d
- Fix build stages
  nsyzrantsev
  committed
  5c5d494
- Add matrix for all stages
  nsyzrantsev
  committed
  170ba18
- Fix skipping logic
  nsyzrantsev
  committed
  13059da
- Fix skipping logic
  nsyzrantsev
  committed
  7a83b30
- Fix skipping logic
  nsyzrantsev
  committed
  7343a37
- Reduce template
  nsyzrantsev
  committed
  4c5311b
- Replace downloader to fq-downloader
  nsyzrantsev
  committed
  962d91a
- Build fq-downloader
  nsyzrantsev
  committed
  97b5ec8
- Fix igblast Dockerfile
  nsyzrantsev
  committed
  44b4b6f
- Build fastp:1.0.1-dev2
  nsyzrantsev
  committed
  2cd074f
- Fix bug with outputs savig in fastp and build fastp:1.0.1-dev3
  nsyzrantsev
  committed
  543ae4d
Commits on Aug 10, 2025
- Build ref images
  nsyzrantsev
  committed
  97061de
- Fix docker-multiarch.yml
  nsyzrantsev
  committed
  03fd189
- Fix igblast-ref-builder and cdr3nt-error-corrector Dockerfiles
  nsyzrantsev
  committed
  6a8a39b
- Update igblast-ref-builder Dockerfile
  nsyzrantsev
  committed
  3034cae
- Update requirements.txt for cdr3nt-error-corrector
  nsyzrantsev
  committed
  b555f73
- Fix igblast-ref-builder image
  nsyzrantsev
  committed
  37c2e8a
- Fix igblast-ref-builder image
  nsyzrantsev
  committed
  9748398
- Optimize igblast-ref-builder image
  nsyzrantsev
  committed
  5734fce
- Add optional_file to igblast-ref-builder image
  nsyzrantsev
  committed
  3d21de5
- Add cpio to igblast-ref-builder image
  nsyzrantsev
  committed
  ffe8a93
- Update dependencies list for igblast-ref-builder
  nsyzrantsev
  committed
  4e18ba9
Commits on Feb 4, 2026
- Merge branch 'main' into add-ci-cd
  
  nsyzrantsev
  and
  claude
  committed
  6c1e3fa
- Replace requirements.txt to pyproject.toml
  nsyzrantsev
  committed
  ac642f0
- Update testing configs
  nsyzrantsev
  committed
  ee0f4ca
- Reformat code, resolve lint and type errors
  nsyzrantsev
  committed
  ea26e81
- feat(ci): implement comprehensive CI/CD workflow with three-stage pipeline
  
  nsyzrantsev
  and
  claude
  committed
  6ab1f41
- fix(ci): add component packages and reporter deps for type checking and unit tests
  
  nsyzrantsev
  and
  claude
  committed
  cce6b74
- fix(ci): add ffq dependency for fq-downloader type checking
  
  nsyzrantsev
  and
  claude
  committed
  223dad5
- Format code
  nsyzrantsev
  committed
  f1b6a08
- Update cdr3nt-error-corrector version
  nsyzrantsev
  committed
  04704b2
- Update cd.yml
  nsyzrantsev
  committed
  e88619c
- Update e2e.yml
  nsyzrantsev
  committed
  6e25331
- Update cd.yml
  nsyzrantsev
  committed
  4d39487

Commits

Commits on Aug 9, 2025

Commits on Aug 10, 2025

Commits on Feb 4, 2026