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Development - #14

Merged

Cristianetaniguti merged 33 commits into

mainfrom

development

Jul 24, 2026

Merged

Development#14
Cristianetaniguti merged 33 commits into
mainfrom
development

Commits on May 22, 2026
- SAT-105 improve message
  Cristianetaniguti
  committed
  dbc1205
- SAT-134 Set BAF weight to zero if no values on window
  Cristianetaniguti
  committed
  3ae188f
- SAT-96 fix
  Cristianetaniguti
  committed
  81c5cfb
Commits on May 29, 2026
- SAT-137 add functions draft
  Cristianetaniguti
  committed
  d5915fb
Commits on Jun 4, 2026
- [SAT-143] density plot bugfix
  Cristianetaniguti
  committed
  68fb40a
- Merge pull request #7 from Breeding-Insight/SAT-137_segregation_test
  Cristianetaniguti
  authored
  a42cac8
Commits on Jun 12, 2026
- rm requirement
  Cristianetaniguti
  committed
  e069b9c
Commits on Jun 15, 2026
- SAT-112 SAT-145 bugfix
  Cristianetaniguti
  committed
  0d15db8
- Merge pull request #8 from Breeding-Insight/SAT-112-add-depth-filter
  Cristianetaniguti
  authored
  349fd4e
- v1.10.0
  Cristianetaniguti
  committed
  e7a91de
Commits on Jun 24, 2026
- add breakpoints counts
  Cristianetaniguti
  committed
  5c3258a
Commits on Jun 26, 2026
- rm model select requirement
  Cristianetaniguti
  committed
  74260ed
- add merge_qploidy_data
  Cristianetaniguti
  committed
  1524885
- build doc
  Cristianetaniguti
  committed
  5a63d6f
Commits on Jun 29, 2026
- improve call dosage
  Cristianetaniguti
  committed
  83386f1
Commits on Jun 30, 2026
- parallelize dosage call
  Cristianetaniguti
  committed
  8f9e7c3
Commits on Jul 17, 2026
- conversion function
  Cristianetaniguti
  committed
  46e4287
- [SAT-159] rerun HMM with overal ploidy without aneuploids
  Cristianetaniguti
  committed
  b6d5d10
Commits on Jul 21, 2026
- many updates
  Cristianetaniguti
  committed
  2fe48c7
- Merge pull request #9 from Breeding-Insight/SAT-74-nQuack-integration
  Cristianetaniguti
  authored
  8a32a2d
Commits on Jul 23, 2026
- SAT-160 karyotype plot
  Cristianetaniguti
  committed
  fbee829
- Potential fix for pull request finding
  
  Cristianetaniguti
  and
  Copilot
  authored
  97aef9e
- Potential fix for pull request finding
  
  Cristianetaniguti
  and
  Copilot
  authored
  8f4cd0b
- Potential fix for pull request finding
  
  Cristianetaniguti
  and
  Copilot
  authored
  dcc4cf8
- small fix
  Cristianetaniguti
  committed
  2d98bb8
- Merge branch 'SAT-152-karyotype' of https://github.com/Breeding-Insight/Qploidy2 into SAT-152-karyotype
  Cristianetaniguti
  committed
  0eebd4a
- up tutorial
  Cristianetaniguti
  committed
  f6eaf6d
- Merge pull request #10 from Breeding-Insight/SAT-152-karyotype
  Cristianetaniguti
  authored
  02e3d36
- Merge pull request #11 from Breeding-Insight/development
  Cristianetaniguti
  authored
  7f5e309
- SAT-160 add ghost
  Cristianetaniguti
  committed
  fa5ce36
- Merge pull request #12 from Breeding-Insight/SAT-74-nQuack-integration
  Cristianetaniguti
  authored
  c8bb4cf
Commits on Jul 24, 2026
- SAT-160 bugfix
  Cristianetaniguti
  committed
  c663c11
- Merge pull request #13 from Breeding-Insight/SAT-74-nQuack-integration
  Cristianetaniguti
  authored
  c4001c6

Commits

Commits on May 22, 2026

Commits on May 29, 2026

Commits on Jun 4, 2026

Commits on Jun 12, 2026

Commits on Jun 15, 2026

Commits on Jun 24, 2026

Commits on Jun 26, 2026

Commits on Jun 29, 2026

Commits on Jun 30, 2026

Commits on Jul 17, 2026

Commits on Jul 21, 2026

Commits on Jul 23, 2026

Commits on Jul 24, 2026