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docs: fix PyPI wording, MyST {doc} roles, and stale test description
IAmirKhani Jul 1, 2026
8773f9b
paper: finalize AI-usage disclosure wording
IAmirKhani Jul 1, 2026
8c4c9e9
paper: scope AI-usage disclosure to documentation and style refactoring
IAmirKhani Jul 1, 2026
bbc9681
fix(packaging): declare matplotlib dependency and trim sdist bloat
IAmirKhani Jul 2, 2026
2cfc31f
Update acknowledgments
IAmirKhani Jul 15, 2026
ffd5c68
Merge branch 'main' into joss-review-fixes
IAmirKhani Jul 15, 2026
fba9e48
update the README
IAmirKhani Jul 16, 2026
5fa3134
docs: describe the real public API in the package docstring
IAmirKhani Jul 17, 2026
7603ede
remove unused stats.summaries module
IAmirKhani Jul 17, 2026
fffbc1f
fix(simulations): honor the rng argument when generating spikes
IAmirKhani Jul 17, 2026
0f0de8d
fix(simulations): use .item() for scalar firing rates
IAmirKhani Jul 17, 2026
3674f72
release: bump to 0.0.2 and single-source the version
IAmirKhani Jul 17, 2026
5b7913f
docs: expand citation author lists and add 2021 framework paper
IAmirKhani Jul 18, 2026
671f118
Merge remote-tracking branch 'origin/main' into joss-review-fixes
IAmirKhani Jul 18, 2026
35ecb06
fix(api): warn when real LFP input is interpreted as phase
IAmirKhani Jul 21, 2026
7a9b27c
docs: clarify analytic LFP input requirements
IAmirKhani Jul 21, 2026
74a7951
docs(paper): correct LFP preprocessing description
IAmirKhani Jul 21, 2026
883e221
Improve paper figure layout and readability
IAmirKhani Jul 21, 2026
734a52b
Keep example figure within main paper text
IAmirKhani Jul 21, 2026
31e3f27
Add required JOSS sections and refine manuscript
IAmirKhani Jul 23, 2026
2825df4
Harden JOSS paper build workflow
IAmirKhani Jul 23, 2026
2774aeb
Merge main and resolve JOSS manuscript conflict
IAmirKhani Jul 23, 2026
7fd9c69
Fix typed statistical test configuration
IAmirKhani Jul 23, 2026
a2a3de6
Merge remote-tracking branch 'origin/main' into joss-review-fixes
IAmirKhani Aug 11, 2026
84322a6
update the bibliography and the pdf version of the manuscript
IAmirKhani Aug 11, 2026
5f7ae7e
paper: update bibliography and rebuild JOSS paper
IAmirKhani Aug 11, 2026
477c01a
Merge main and rebuild JOSS paper
IAmirKhani Aug 11, 2026
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25 changes: 15 additions & 10 deletions paper/paper.bib
Original file line number Diff line number Diff line change
@@ -1,12 +1,12 @@
@article{safavi2021univariate,
title={From univariate to multivariate coupling between continuous signals and point processes: a mathematical framework},
author={Safavi, Shervin and Logothetis, Nikos K and Besserve, Michel},
journal={Neural computation},
volume={33},
number={7},
pages={1751--1817},
year={2021},
publisher={MIT Press One Rogers Street, Cambridge, MA 02142-1209, USA journals-info~…}
title = {From univariate to multivariate coupling between continuous signals and point processes: A mathematical framework},
author = {Safavi, Shervin and Logothetis, Nikos K. and Besserve, Michel},
journal = {Neural Computation},
year = {2021},
volume = {33},
number = {7},
pages = {1751--1817},
doi = {10.1162/neco_a_01389}
}

@article{buzsaki2012origin,
Expand Down Expand Up @@ -201,9 +201,14 @@ @article{Nouri2025

@book{anderson2010random,
title = {An Introduction to Random Matrices},
author = {Anderson, G. W. and Guionnet, A. and Zeitouni, O.},
author = {Anderson, Greg W. and Guionnet, Alice and Zeitouni, Ofer},
publisher = {Cambridge University Press},
year = {2010}
year = {2010},
series = {Cambridge Studies in Advanced Mathematics},
volume = {118},
pages = {xiv+492},
isbn = {978-0-521-19452-5},
doi = {10.1017/CBO9780511801334}
}

@article{chavez2006proper,
Expand Down
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