[dependabot]

Updates the requirements on Random, Test, EpiAwareADTools, Statistics, EpiAwarePackageTools, Pkg and Markdown to permit the latest version.
Updates Random to
Updates Test to
Updates EpiAwareADTools to 0.2.3

Release notes

Sourced from EpiAwareADTools's releases.

v0.2.3

EpiAwareADTools v0.2.3

Diff since v0.2.2

• Made a truncated Student-t differentiable. truncated normalises eagerly, so building a truncated TDist calls logcdf, which routes to SpecialFunctions.beta_inc and has no method for a Dual. Every gradient through a truncated t therefore failed outright rather than returning a wrong number. TDist and its location-scale wrapper now evaluate through the AD-safe hooks on all seven backends. Building a truncated t directly from tracked parameters stays ForwardDiff-only, which is how Gamma and Beta already behave, since that path needs Dual methods added to Distributions and no other backend extension adds them.
• Relaxed the AD-safe evaluation hooks so they no longer require a Distributions.UnivariateDistribution subtype. cdf_ad_safe, logcdf_ad_safe, ccdf_ad_safe, logccdf_ad_safe and pdf_ad_safe previously raised a MethodError on a leaf that implements the univariate interface without inheriting from it, which blocked duck-typed leaves inside racing-hazard (compete) nodes and duck-typed components in a convolution's quadrature path. primal_distribution was relaxed with it, and a type carrying no params method now raises an ArgumentError naming the type rather than a MethodError.
• Added the missing Extensions section of the documentation site. The navigation already declared one page per package extension, but none of the pages had been written, so the whole group was dropped from the build and readers saw no Extensions section at all.

Merged pull requests:

• docs: write the seven package extension pages (#84) (@​seabbs-bot)
• fix: accept duck-typed leaves in the AD-safe hooks and primal_distribution (#85) (@​seabbs-bot)
• fix: make a truncated Student-t differentiable (#80) (#86) (@​seabbs-bot)
• docs: land the extension-page corrections that missed the #84 merge (#89) (@​seabbs-bot)
• chore: auto-increment version to 0.2.3 (#90) (@​github-actions[bot])
• ci(deps): bump the github-actions group with 12 updates (#91) (@​dependabot[bot])
• fix: run the AS 187 shape-partial series to convergence at large shape (#93) (@​seabbs-bot)
• docs: update shared ecosystem badge to new EpiAware design system icon (#94) (@​seabbs-bot)
• ci(deps): bump the github-actions group with 12 updates (#98) (@​dependabot[bot])

Closed issues:

• Benchmarks and AD benchmarks (#28)
• Epic: AD, numerics and differentiation tooling (#35)
• docs: wire up the split AD-comparison benchmark page after kit#305 (#49)
• _grad_p_a_series loses accuracy at extreme shapes (k ≳ 1e5) (#67)
• Write docs pages for the seven extensions (#68)
• truncated(TDist) is not ForwardDiff-differentiable: truncated eagerly calls logcdf, which routes to beta_inc (#80)
• logccdf_ad_safe is bounded on UnivariateDistribution, blocking duck-typed leaves in compete (#81)
• cdf_ad_safe/pdf_ad_safe/primal_distribution have no duck-typed fallback (#83)

Commits

• 566ba15 ci(deps): bump the github-actions group with 12 updates (#98)
• 7cfbbe9 fix: run the AS 187 shape-partial series to convergence at large shape (#93)
• 9cf7490 docs: update shared ecosystem badge to new EpiAware design system icon (#94)
• b76e210 chore: auto-increment version to 0.2.3 (#90)
• 1803f25 fix: make a truncated Student-t differentiable (#80) (#86)
• 66b600c fix: accept duck-typed leaves in the AD-safe hooks and primal_distribution (#85)
• 1254069 docs: land the extension-page corrections that missed the #84 merge (#89)
• f491db0 ci(deps): bump the github-actions group with 12 updates (#91)
• 495ec90 docs: write the seven package extension pages (#84)
• cb7ed63 Update Project.toml
• Additional commits viewable in compare view

Updates Statistics to
Updates EpiAwarePackageTools to 0.4.1

Release notes

Sourced from EpiAwarePackageTools's releases.

v0.4.1

EpiAwarePackageTools v0.4.1

Diff since v0.4.0

This release folds in everything merged since v0.3.0: the managed formatter moved from JuliaFormatter to Runic, the kit itself gained Julia 1.10 support, and the AD harness picked up a filtered run_selected scenario/backend runner and a compiled ReverseDiff backend. Docs and standards also moved: a published inventory of dispatch-rule deviations, a new standards rule on duck-typed interfaces, a managed org coding-standards block for CLAUDE.md, and several accuracy and prose fixes across the getting-started pages. An adopting package picks all of this up on its next scheduled sync (update); nothing here needs a manual step beyond that.

Merged pull requests:

• chore: patch release compliance pass and version bump (#441) (@​seabbs-bot)

Closed issues:

• Release 0.4.0 (#431)
• Sweep issue/PR numbers out of internal comments (standards rule 8) (#439)
• Release v0.4.1 (#440)

Commits

• See full diff in compare view

Updates Pkg to
Updates Markdown to

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[github-actions]

Try this Pull Request!

Option 1: Julia Package Manager

Open Julia and type:

import Pkg
Pkg.activate(temp=true)
Pkg.add(url="https://github.com/EpiAware/ModifiedDistributions.jl", rev="dependabot/julia/julia-16f6c91b06")
using ModifiedDistributions

Option 2: Local Checkout

If you have the repo locally:

git checkout dependabot/julia/julia-16f6c91b06
julia --project=. -e "using Pkg; Pkg.instantiate()"

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.

Flag	Coverage Δ
ad-enzyme-forward	40.80% <ø> (+13.66%)	⬆️
ad-enzyme-reverse	40.80% <ø> (+13.66%)	⬆️
ad-forwarddiff	34.74% <ø> (+18.57%)	⬆️
ad-reversediff	34.74% <ø> (+18.57%)	⬆️
unit	97.42% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

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[github-actions]

📖 Documentation preview is ready!

View the docs for this PR at: https://EpiAware.github.io/ModifiedDistributions.jl/previews/PR162/

This preview will be updated automatically when you push new commits.

[dependabot]

Looks like these dependencies are updatable in another way, so this is no longer needed.