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chore(deps): bump the julia group across 1 directory with 3 updates - #166

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chore(deps): bump the julia group across 1 directory with 3 updates#166
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dependabot/julia/julia-7562453386

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Updates the requirements on DocStringExtensions, EpiAwareADTools and EpiAwarePackageTools to permit the latest version.
Updates DocStringExtensions to 0.10.0

Release notes

Sourced from DocStringExtensions's releases.

v0.10.0

DocStringExtensions v0.10.0

Diff since v0.9.5

See https://github.com/JuliaDocs/DocStringExtensions.jl/blob/master/CHANGELOG.md for a list of changes.

Merged pull requests:

... (truncated)

Changelog

Sourced from DocStringExtensions's changelog.

v0.10.0 - 2026-10-14

Breaking

  • @template rejects a category no docstring belongs to, such as a misspelled name, with an ArgumentError. It used to store a template that never applied, so a package with such a category now fails to precompile until the category is corrected or removed (#223)
  • @template throws an ArgumentError for a template string without $(DOCSTRING), including a plain string literal, when the template is defined. Some of these templates used to load and fail with a MethodError only when Julia displayed a docstring. A package that defines one now fails to precompile (#151)
  • More docstrings get a template, and some get a different one. A docstring now gets its template when it sits in the same begin block as the @template (#288), documents a bare existing name such as "..." f (#291), or documents a parametric type's constructor (#226). A method defined through a const alias gets METHODS where it got CONSTANTS (#289). A function named like a macro, such as var"@f", no longer gets MACROS (#263). Bindings documented together each get their own category's template (#210). Where a docstring repeats by hand what its template prints, the text now appears twice

Added

  • Add TYPEDMETHODLIST, which lists methods like METHODLIST but with argument and return types. TypedMethodList(returns = false) leaves out the return types (#150, #197)
  • Add TypedMethodSignatures(returns = false), which renders typed signatures without return types (#159, #179)
  • Add a returns option to MethodSignatures and MethodList that follows each signature with its inferred return type. MethodSignatures and TypedMethodSignatures also take a string, such as returns = "success::Bool", which they print after -> in place of the inferred type (#206, #246)
  • Add the DOCSTRINGEXTENSIONS_RETURN_ARROW and DOCSTRINGEXTENSIONS_SIGNATURE_WIDTH environment variables. A reader sets them to change the arrow before return types, such as to →, and the width at which a signature wraps to one argument per line, 60 by default (#252, #267)
  • Add a defaults = true option to MethodSignatures and TypedMethodSignatures that prints default argument values, with the methods generated for positional defaults collapsed into one signature (#19, #107, #194)
  • Add a defaults = :brackets option to MethodSignatures and TypedMethodSignatures. It prints the collapsed signature without default values. Each optional positional argument appears in brackets. Any other symbol passed as defaults throws an ArgumentError (#206, #247)
  • Add PUBLIC to list a module's public names, both exported and declared public (#190)
  • Add INSTANCES to list the instances of an enum with their values. It supports @enum and EnumX.jl's @enumx (#171)
  • Add SUBTYPES to list the direct subtypes of a type as links. It lists only subtypes defined in the type's own module or a module inside it (#47, #154, #227)
  • Add BODY to print the body of the documented method definition as a Julia code block (#54, #237)
  • Add NOTEMPLATE, which stops a module's @template applying to the docstring it appears in. TemplateOverride(category) applies the template for another category instead (#158, #240)
  • Add the ABSTRACTTYPES template category for abstract types. A module without one documents abstract types with its TYPES template, as before (#147, #241)
  • SIGNATURES and TYPEDSIGNATURES in the docstring of a macro print it as its caller writes it, such as @m a b. The __source__ and __module__ arguments and the inferred return type are left out. They printed nothing before. METHODLIST and TYPEDMETHODLIST list a macro the same way. For a vararg macro they printed its hidden arguments, and for any other macro nothing (#262)
  • SIGNATURES and TYPEDSIGNATURES in the docstring of a struct list the constructors its definition creates. They printed nothing before (#71, #245)
  • Declare the interface for writing an abbreviation public on Julia 1.11 and later: Abbreviation, format and interpolation. A new guide covers it (#86, #303)
  • Declare the types that take abbreviation options public on Julia 1.11 and later, such as MethodSignatures and TypeFields. Each one appears on its topic's reference page (#303)
  • Add TypeFields(; types, defaults), whose keywords match the other option types (#303)

Changed

  • Signatures leave out a return type inferred as Any, as they already did for Nothing. -> Any says only that inference could not work out the type (#301, #298)
  • The manual splits into Examples and Reference sections with one page per topic. Each example page prints its source above the rendered docstrings, and new pages cover PUBLIC, INSTANCES, and @template with DOCSTRING. The package docstring is rewritten. A Setup page covers adding the package, templates, and Documenter. The docstrings of the package, @template and every abbreviation except README and LICENSE carry examples as doctests, which the docs build checks against the real output. They replace hand-written samples that had drifted from it (#122, #215)
  • SIGNATURES prints an unnamed argument with a declared type as ::T, as TYPEDSIGNATURES does, so foo(::Val{N}) no longer prints as foo(_). An untyped unnamed argument still prints as _ (#161, #235)
  • TYPEDSIGNATURES and TYPEDMETHODLIST print the declared type of each keyword argument, such as f(x; n::Int64). An untyped keyword and a kwargs... keyword print without one (#97, #244)
  • FIELDS and TYPEDFIELDS print each field's default value, such as retries::Int64 = 3, for structs defined with Base.@kwdef or a macro that uses the same syntax. TypeFields(defaults = false) hides them (#182, #245)
  • @template applies a template when its docstring is defined, not when it is displayed, so a templated docstring no longer stores the documented expression in the package image. A docstring for a binding that does not exist yet keeps its template until display. Bindings documented together, such as @doc "..." (f, T), each get the template for their own category, where they all used the last binding's (#210)

Deprecated

  • TypeFields(types::Bool) is deprecated in favour of TypeFields(types = ...) (#303)

Fixed

  • Fix inferred return types printing the names inference gives the type parameters it cannot work out, such as -> Pair{_A, Int} where _A. They print as their bound, -> Pair{<:Any, Int}, on Julia 1.3 and later (#300, #297)
  • Fix TYPEDSIGNATURES leaving out the return type of a callable such as (e::E)(x) and of a constructor written T{P}(...). Before Julia 1.6 they still print without one (#279, #296)
  • Fix a wrapped signature with only keyword arguments printing ; alone on its own line. It prints f(; on the first line. A signature without arguments no longer wraps, so a long return type follows f() (#281, #295)
  • Fix METHODLIST and TYPEDMETHODLIST in a parametric type's docstring leaving out the constructors written T{P}(...) (#280, #294)
  • Fix signatures printing a where bound that names another type parameter with Array{T, 1} where the source writes Vector{T}, such as S<:Vector{T} (#278, #293)
  • Fix a world-age warning on Julia 1.12 and later when @template and a docstring expand together from running code, such as in one macroexpand call. Under --depwarn=error the docstring lost its template (#277, #292)
  • Fix @template skipping a docstring on a bare existing name, such as "..." f after function f end. The dotted form "..." M.f already got its template (#276, #291)

... (truncated)

Commits
  • 2ce303a Merge pull request #305 from JuliaDocs/mh/release-0.10.0
  • 1eae881 Update version to 0.10.0
  • 170f571 Merge pull request #307 from JuliaDocs/mh/fix-type-parameters
  • a75fe18 ci: fail the test jobs on any deprecation warning
  • 694e005 test(base_assumptions): read Type{A}'s parameter through the shim
  • 1f6d09a Merge pull request #306 from JuliaDocs/mh/docs-instantiate
  • b28f4b4 ci(docs): build the docs against a cloned Documenter
  • aa4ede4 Merge pull request #303 from JuliaDocs/mh/public-extension-api
  • e2ee2b3 Merge pull request #304 from JuliaDocs/mh/docs-fixes
  • a54bfc7 docs(signatures): state the printing rules in the docstrings
  • Additional commits viewable in compare view

Updates EpiAwareADTools to 0.2.3

Release notes

Sourced from EpiAwareADTools's releases.

v0.2.3

EpiAwareADTools v0.2.3

Diff since v0.2.2

  • Made a truncated Student-t differentiable. truncated normalises eagerly, so building a truncated TDist calls logcdf, which routes to SpecialFunctions.beta_inc and has no method for a Dual. Every gradient through a truncated t therefore failed outright rather than returning a wrong number. TDist and its location-scale wrapper now evaluate through the AD-safe hooks on all seven backends. Building a truncated t directly from tracked parameters stays ForwardDiff-only, which is how Gamma and Beta already behave, since that path needs Dual methods added to Distributions and no other backend extension adds them.
  • Relaxed the AD-safe evaluation hooks so they no longer require a Distributions.UnivariateDistribution subtype. cdf_ad_safe, logcdf_ad_safe, ccdf_ad_safe, logccdf_ad_safe and pdf_ad_safe previously raised a MethodError on a leaf that implements the univariate interface without inheriting from it, which blocked duck-typed leaves inside racing-hazard (compete) nodes and duck-typed components in a convolution's quadrature path. primal_distribution was relaxed with it, and a type carrying no params method now raises an ArgumentError naming the type rather than a MethodError.
  • Added the missing Extensions section of the documentation site. The navigation already declared one page per package extension, but none of the pages had been written, so the whole group was dropped from the build and readers saw no Extensions section at all.

Merged pull requests:

Closed issues:

  • Benchmarks and AD benchmarks (#28)
  • Epic: AD, numerics and differentiation tooling (#35)
  • docs: wire up the split AD-comparison benchmark page after kit#305 (#49)
  • _grad_p_a_series loses accuracy at extreme shapes (k ≳ 1e5) (#67)
  • Write docs pages for the seven extensions (#68)
  • truncated(TDist) is not ForwardDiff-differentiable: truncated eagerly calls logcdf, which routes to beta_inc (#80)
  • logccdf_ad_safe is bounded on UnivariateDistribution, blocking duck-typed leaves in compete (#81)
  • cdf_ad_safe/pdf_ad_safe/primal_distribution have no duck-typed fallback (#83)
Commits
  • 566ba15 ci(deps): bump the github-actions group with 12 updates (#98)
  • 7cfbbe9 fix: run the AS 187 shape-partial series to convergence at large shape (#93)
  • 9cf7490 docs: update shared ecosystem badge to new EpiAware design system icon (#94)
  • b76e210 chore: auto-increment version to 0.2.3 (#90)
  • 1803f25 fix: make a truncated Student-t differentiable (#80) (#86)
  • 66b600c fix: accept duck-typed leaves in the AD-safe hooks and primal_distribution (#85)
  • 1254069 docs: land the extension-page corrections that missed the #84 merge (#89)
  • f491db0 ci(deps): bump the github-actions group with 12 updates (#91)
  • 495ec90 docs: write the seven package extension pages (#84)
  • cb7ed63 Update Project.toml
  • Additional commits viewable in compare view

Updates EpiAwarePackageTools to 0.4.1

Release notes

Sourced from EpiAwarePackageTools's releases.

v0.4.1

EpiAwarePackageTools v0.4.1

Diff since v0.4.0

This release folds in everything merged since v0.3.0: the managed formatter moved from JuliaFormatter to Runic, the kit itself gained Julia 1.10 support, and the AD harness picked up a filtered run_selected scenario/backend runner and a compiled ReverseDiff backend. Docs and standards also moved: a published inventory of dispatch-rule deviations, a new standards rule on duck-typed interfaces, a managed org coding-standards block for CLAUDE.md, and several accuracy and prose fixes across the getting-started pages. An adopting package picks all of this up on its next scheduled sync (update); nothing here needs a manual step beyond that.

Merged pull requests:

Closed issues:

  • Release 0.4.0 (#431)
  • Sweep issue/PR numbers out of internal comments (standards rule 8) (#439)
  • Release v0.4.1 (#440)
Commits

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@dependabot
chore(deps): bump the julia group across 1 directory with 3 updates
d47da20 
Updates the requirements on [DocStringExtensions](https://github.com/JuliaDocs/DocStringExtensions.jl), [EpiAwareADTools](https://github.com/EpiAware/EpiAwareADTools.jl) and [EpiAwarePackageTools](https://github.com/EpiAware/EpiAwarePackageTools.jl) to permit the latest version.

Updates `DocStringExtensions` to 0.10.0
- [Release notes](https://github.com/JuliaDocs/DocStringExtensions.jl/releases)
- [Changelog](https://github.com/JuliaDocs/DocStringExtensions.jl/blob/master/CHANGELOG.md)
- [Commits](JuliaDocs/DocStringExtensions.jl@v0.9.0...v0.10.0)

Updates `EpiAwareADTools` to 0.2.3
- [Release notes](https://github.com/EpiAware/EpiAwareADTools.jl/releases)
- [Changelog](https://github.com/EpiAware/EpiAwareADTools.jl/blob/main/docs/release_notes_header.jl)
- [Commits](EpiAware/EpiAwareADTools.jl@v0.1.0...v0.2.3)

Updates `EpiAwarePackageTools` to 0.4.1
- [Release notes](https://github.com/EpiAware/EpiAwarePackageTools.jl/releases)
- [Changelog](https://github.com/EpiAware/EpiAwarePackageTools.jl/blob/main/docs/release_notes_header.jl)
- [Commits](https://github.com/EpiAware/EpiAwarePackageTools.jl/commits/v0.4.1)

---
updated-dependencies:
- dependency-name: DocStringExtensions
  dependency-version: 0.10.0
  dependency-type: direct:production
  dependency-group: julia
- dependency-name: EpiAwareADTools
  dependency-version: 0.2.3
  dependency-type: direct:production
  dependency-group: julia
- dependency-name: EpiAwarePackageTools
  dependency-version: 0.4.1
  dependency-type: direct:production
  dependency-group: julia
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file julia Pull requests that update julia code labels Oct 19, 2026
@github-actions

github-actions Bot commented Oct 19, 2026

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Try this Pull Request!

Option 1: Julia Package Manager

Open Julia and type:

import Pkg
Pkg.activate(temp=true)
Pkg.add(url="https://github.com/EpiAware/ModifiedDistributions.jl", rev="dependabot/julia/julia-7562453386")
using ModifiedDistributions

Option 2: Local Checkout

If you have the repo locally:

git checkout dependabot/julia/julia-7562453386
julia --project=. -e "using Pkg; Pkg.instantiate()"

@codecov

codecov Bot commented Oct 19, 2026 •
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Codecov Report

✅ All modified and coverable lines are covered by tests.

Flag Coverage Δ
ad-enzyme-forward 40.80% <ø> (+13.66%) ⬆️
ad-enzyme-reverse 40.80% <ø> (+13.66%) ⬆️
ad-forwarddiff 34.74% <ø> (+18.57%) ⬆️
ad-reversediff 34.74% <ø> (+18.57%) ⬆️

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🚀 New features to boost your workflow:
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@dependabot @github

dependabot Bot commented on behalf of github Oct 28, 2026

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Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot Bot closed this Oct 28, 2026
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dependabot Bot deleted the dependabot/julia/julia-7562453386 branch October 28, 2026 08:56
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