feat(summary): copy-number, traits, SV, ancestry and the other sections in Rust by geiresx · Pull Request #405 · GeiserX/OwnGenome

feat(dev): og dev build rebuilds the three committed asset tables

GeiserX

committed

0f241f3

build(ci): switch the asset builders to og dev build, one fetch rule

GeiserX

committed

f47eb8a

test(dev): plant three wrong builder rules to show the tests go red

GeiserX

committed

1f2b7fc

feat(summary): read the clinical sections in Rust (og summary collect --only b)

GeiserX

committed

fb4c96c

feat(summary): read the summary's group c sections in Rust

GeiserX

committed

2ad137d

perf(summary): read the clinical VCF and the ClinVar hits line by line

GeiserX

committed

075b43b

fix(summary): word a broken PharmCAT report as Python's json does

GeiserX

committed

391581c

test(parity): the clinical sections of summary collect against the Python

GeiserX

committed

4c06a83

docs(summary): og summary collect --only b in the changelog and the crate map

GeiserX

committed

f3177f5

test(summary): red control acmg-biallelic-ignores-phase (reverted next)

GeiserX

committed

8fb444c

Revert "test(dev): plant three wrong builder rules to show the tests go red"

GeiserX

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1b8998f

feat(summary): finish group c readers, og roh summary and their parity cases

GeiserX

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31fda57

test(summary): red control, match the G2 record by its own REF and ALT

GeiserX

committed

8f0a4e1

fix(ci): a fetch of its own per run, and a stalled transfer counts as failed

GeiserX

committed

cebf6b9

fix(summary): restore read-backed phase after the red control

GeiserX

committed

b5d1a1f

test(summary): share the synthetic Cyrius table header

GeiserX

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c3bd0a2

fix(summary): restore haplotype matching after the G2 red control

GeiserX

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93428ba

test(summary): share repeat fixture format headers

GeiserX

committed

7adf3d4

fix(ci): stop pinned downloads on every forbidden or missing response

GeiserX

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0948aae

test(summary): reproduce quoted headers and Unicode contigs

GeiserX

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77fc9f0

test(summary): cover nonfinite depths and bounded G2 windows

GeiserX

committed

ab1902f

fix(summary): parse quoted headers and guard contig prefixes

GeiserX

committed

1a883cd

Merge remote-tracking branch 'origin/main' into pgp/rust-r2b

GeiserX

committed

990999c

fix(summary): reject NaN CHIP depths and bound unindexed G2 reads

GeiserX

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066878f

Merge remote-tracking branch 'origin/main' into pgp/rust-z2b

GeiserX

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2becddc

chore(summary): merge main to resolve changelog conflict

GeiserX

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a6f150d

fix(ci): stop E2E legs dying at the spare-disk mount on runners that list zram0

GeiserX

committed

030fbdf

Merge commit '030fbdfec608cb0cee5a9722bb7c0572dab0e257' into pgp/rust-z2b

GeiserX

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1c08392

Merge commit '1c08392a2f117bdd8b6ca2f274a5e045f6c37966' into pgp/rust-r2b

GeiserX

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53e170d

Merge commit '53e170d444ee786f0662a08292ac2111a3e86e12' into pgp/rust-r2c

GeiserX

committed

344be43

Merge main into pgp/rust-r2c: the car before landed, no file changes

GeiserX

committed

1168185

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feat(summary): copy-number, traits, SV, ancestry and the other sections in Rust - #405

feat(summary): copy-number, traits, SV, ancestry and the other sections in Rust#405
GeiserX merged 31 commits into
GeiserX:mainfrom
geiresx:pgp/rust-r2c

Commits on Nov 13, 2026

feat(dev): og dev build rebuilds the three committed asset tables

build(ci): switch the asset builders to og dev build, one fetch rule

test(dev): plant three wrong builder rules to show the tests go red

feat(summary): read the clinical sections in Rust (og summary collect --only b)

feat(summary): read the summary's group c sections in Rust

perf(summary): read the clinical VCF and the ClinVar hits line by line

fix(summary): word a broken PharmCAT report as Python's json does

test(parity): the clinical sections of summary collect against the Python

docs(summary): og summary collect --only b in the changelog and the crate map

test(summary): red control acmg-biallelic-ignores-phase (reverted next)

Revert "test(dev): plant three wrong builder rules to show the tests go red"

feat(summary): finish group c readers, og roh summary and their parity cases

test(summary): red control, match the G2 record by its own REF and ALT

fix(ci): a fetch of its own per run, and a stalled transfer counts as failed

fix(summary): restore read-backed phase after the red control

test(summary): share the synthetic Cyrius table header

fix(summary): restore haplotype matching after the G2 red control

test(summary): share repeat fixture format headers

fix(ci): stop pinned downloads on every forbidden or missing response

test(summary): reproduce quoted headers and Unicode contigs

test(summary): cover nonfinite depths and bounded G2 windows

fix(summary): parse quoted headers and guard contig prefixes

Merge remote-tracking branch 'origin/main' into pgp/rust-r2b

fix(summary): reject NaN CHIP depths and bound unindexed G2 reads

Merge remote-tracking branch 'origin/main' into pgp/rust-z2b

chore(summary): merge main to resolve changelog conflict

fix(ci): stop E2E legs dying at the spare-disk mount on runners that list zram0

Merge commit '030fbdfec608cb0cee5a9722bb7c0572dab0e257' into pgp/rust-z2b

Merge commit '1c08392a2f117bdd8b6ca2f274a5e045f6c37966' into pgp/rust-r2b

Merge commit '53e170d444ee786f0662a08292ac2111a3e86e12' into pgp/rust-r2c

Merge main into pgp/rust-r2c: the car before landed, no file changes