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1. gReLU gReLU Public

   gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

   Python 334 54

2. SpatialAgent SpatialAgent Public

   An AI agent for spatial biology

   Python 196 26

3. equifold equifold Public

   Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

   Python 129 18

4. gneprop gneprop Public

   GNEprop is a graph neural network-based model to predict antibacterial activity from molecular structures in virtual screening settings.

   Jupyter Notebook 45 5

5. scallops scallops Public

   SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of Optical Pooled Screens (OPS) for biological data.

   Python 9 1

6. sceps sceps Public

   scEPS integrates GWAS and single-cell disease cell atlas data to identify disease-associated cell neighborhoods.

   Python 3