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Welcome to the QuagmiR wiki!

QuagmiR basics

1. QuagmiR motif file
2. QuagmiR configuration
3. QuagmiR Output and Examples
4. QuagmiR on the Seven Bridges Cancer Genomics Cloud (CGC)
5. QuagmiR GFF Output Report

QuagmiR Advanced

• Scripts to generate motif files
• QuagmiR on local machines
• QuagmiR on Biowulf
• QuagmiR Docker images

QuagmiR Tutorials

• Analysis shRNA maturation products (coming soon)
• Analysis of 3' modifications (coming soon)

QuagmiR steps

Links of interest

• miRTop: Small RNA standard annotations project and code
• miR Tools Gallery
• OMICtools
• Tools4miRs

Citation:

• QuagmiR: A Cloud-based Application for IsomiR Big Data Analytics. Bofill-De Ros X, Chen K, Chen S, Tesic N, Randjelovic D, Skundric N, Nesic S, Varjacic V, Williams EH, Malhotra R, Jiang M, Gu S. Bioinformatics. 2018 Oct 8. doi: 10.1093/bioinformatics/bty843.
• Pubmed link