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Update Clair3, ClairS, DeepVariant and DeepSomatic - #213

Merged

AmberVerhasselt merged 8 commits into

chore/module-updatesfrom

chore/variant-caller-updates

Oct 2, 2026

Merged

Update Clair3, ClairS, DeepVariant and DeepSomatic#213
AmberVerhasselt merged 8 commits into
chore/module-updatesfrom
chore/variant-caller-updates

Commits on Oct 1, 2026
- Update Clair3, ClairS, DeepVariant and DeepSomatic
  
  ljwharbers
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  claude
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  0e628ff
- Restore DeepVariant edits that were missing from the patch files
  
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  7cb08bb
- Update default, chm13 and clair_only snapshots for the new callers
  
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  c1d0489
- Update consensus, deep_only and union snapshots for the new callers
  
  ljwharbers
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  69ebae2
- Fill in PR number in CHANGELOG entry
  
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  d3d4614
- Skip nf-core component tests in nextflow-lint
  
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  906aad3
- Merge branch 'chore/module-updates' into chore/variant-caller-updates
  ljwharbers
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  a8d27e6
- Address review: DeepSomatic small model, ClairS container ternary
  
  ljwharbers
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  fc0e823