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KharfiIslam/README.md

Hi, I'm Islam Kharfi ๐Ÿ‘‹

Biotechnology Engineer ยท Clinical AI & Bioinformatics

Biotechnology Engineering Graduate ยท Master's in Biotechnology and Health at ENSB, Algeria.
I build AI systems at the intersection of clinical data, signal processing, and bioinformatics.


๐Ÿ”ฌ What I work on

  • Clinical AI โ€” psychiatric/disease classification from EEG and multimodal clinical data
  • Bioinformatics โ€” omics data integration and biomarker discovery pipelines
  • Biosignal & biosensor processing โ€” audit, preprocessing, and quality-control pipelines
  • Medical device software โ€” DICOM/3D-printing workflows for radiotherapy tooling
  • Fine-tuning and deploying LLMs as clinical assistants

๐Ÿš€ Featured projects

Project Description
BioPrep-AI LLM-driven biosensor preprocessing tool โ€” audits raw signal/image files, generates and self-tests a custom preprocessing pipeline, containerized with offline-safe fallbacks. Built for OpenAI Build Week 2026.
AffiBio Gene and variant analysis tool combining ClinVar/PubMed literature evidence (Affinage) with an LLM biomedical reasoning agent (Biomni). Analyzes genes, phenotypes, or VCF files via CLI or Streamlit, with dynamic tool selection and structured output enforcement to catch unverified agent claims.
NEUROPREDAI EEG-based psychiatric classification platform (MDD/ADHD/SMC/Healthy) with 85.4% accuracy. Full-stack deployment (Next.js, FastAPI, Supabase) plus a fine-tuned Local clinical LLM assistant.
color-app Streamlit tool to generate complementary, triadic, and analogous color palettes from a name or HEX code, for designers and creatives.

๐Ÿ› ๏ธ Tech I use

Python Streamlit Gradio FastAPI Next.js PyTorch OpenCV scipy ML Docker Supabase Hugging Face Ollama DL

๐Ÿ“ซ Reach me


Open to freelance work and collaborations in clinical AI and bioinformatics.

Popular repositories Loading

  1. BioPrep-AI BioPrep-AI Public

    LLM-driven biosensor preprocessing: audit signal/image files, generate sandboxed pipelines, and containerize with offline-safe fallbacks.

    Python 1

  2. AffiBio AffiBio Public

    Gene and variant analysis tool combining Affinage (ClinVar/PubMed literature evidence) with Biomni (LLM-powered biomedical reasoning). Analyze genes, phenotypes, or VCF files via CLI or Streamlit wโ€ฆ

    Python 1

  3. color-app color-app Public

    Python

  4. KharfiIslam KharfiIslam Public