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Lukecele/README.md

Luca Celebrano

MD Candidate & Computational Oncology Researcher · Università degli Studi di Napoli Federico II
Computational oncology, spatial multi-omics, reaction-diffusion biophysics & reproducible software.
Founder of Web3 protocol @arbincept.

🌐 The Cave (Research Portfolio) · 📝 Substack · 💼 LinkedIn · 🆔 ORCID · 🤗 Hugging Face


🎬 3D Biophysical Simulation Series & Digital Twin

🌐 Interactive 3D WebGL Twin & Lab · ⭐ Inflammatory Onco-Physics Repo · ⚡ 1-Click Colab Solver · 📄 Research Square Preprint (10.21203/rs.3.rs-11695210/v1)

5-Part 4K Simulation Series (YouTube Shorts):
Part 1: Perivascular Sanctuaries · Part 2: Matrix Breach & ctDNA · Part 3: Desmoplastic Shield · Part 4: Targeted Antibody Influx · Part 5: 5.5-Month ctDNA Lead Time


🧠 Plain-Language Digest (Gist.Science)

Author-reviewed clinical & biophysical lay summary (Conditions for Pharmacological Sanctuaries in Perivascular Tumour Cords, rs-11530312) by Dr. Luc Hendriks, PhD & Luca Celebrano:

🇬🇧 Read English Plain-Language Digest ↗

Also translated into 11 languages:
🇮🇳 हिन्दी (Hindi) · 🇮🇹 Italiano · 🇪🇸 Español · 🇫🇷 Français · 🇩🇪 Deutsch · 🇵🇹 Português · 🇨🇳 中文 · 🇯🇵 日本語 · 🇰🇷 한국어 · 🇸🇦 العربية · 🇳🇱 Nederlands


🔬 Research & Computational Systems

1. 🏆 Inflammatory Onco-Physics (Flagship)

A Reaction-Diffusion Theory of Microvascular Pharmacological Sanctuaries and Inflammatory Pre-conditioning Explains Post-Adjuvant Relapse Dynamics Across 3,461 Patients.

An in silico biophysical reaction-diffusion theory of pharmacological sanctuaries, post-ADAURA recurrence kinetics, and the prospective SG-ADAURA trial protocol hypothesis.

Evidence-linked translational models, exploratory GIST phenotype scoring, candidate registry, and Composite Resistance Index (CRI) audit tools.

4. 🎲 InSituGame

Spatial evolutionary game-theoretic assay for inferring subclonal payoff matrices and adaptive therapy dynamics.

Subcellular transport boundaries in EGFR-mutant NSCLC via 10x Visium HD (officially curated in awesome-single-cell).

6. 👁️ InSituVision-AI

Low-cost Attention-MIL pathology AI for spatial vascular decoupling on routine H&E whole-slide images.

Cylindrical Bessel K₀ reaction-diffusion solver and MSKCC survival validation (N = 604).


📦 Software Packages & Stack

conda install -c bioconda spatial-continuum insitugame spatial-sanctuary
pip install spatial-continuum
  • Package Registries: PyPI · Bioconda
  • Stack: Python (NumPy, SciPy, pandas, scikit-learn, PyTorch, lifelines) · Nextflow DSL2 (nf-core) · Snakemake · Galaxy (IUC) · Bioconda · Docker/Singularity · TypeScript · Three.js

🩺 Clinical Education

Interactive 3D cardiology & pulmonology learning platform built with React, TypeScript, Three.js, and Tailwind CSS (3D cardiac anatomy, ECG telemetry simulator, auscultation audio library).
👉 Launch MedTerminal ↗

💼 Engineering Roots: Web3 & DeFi (Click to expand)

Before entering medical research, I built open-source blockchain and protocol software through the Arbitrage Inception organization:

This deterministic systems background directly informs my approach to scientific software reliability.


🤝 Verified Upstream Contributions

Selected merged pull requests in upstream repositories:


📬 Contact & Academic Affiliations

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  1. inflammatory-onco-physics inflammatory-onco-physics Public

    A Reaction-Diffusion Theory of Microvascular Pharmacological Sanctuaries and Inflammatory Pre-conditioning (N=3,461, 11 Cohorts)

    Python 1

  2. spatial-continuum-oncology spatial-continuum-oncology Public

    🔬 Why do 68% of lung cancers relapse post-ADAURA? Biophysical reaction-diffusion solver, 60 FPS simulator & 1-click Colab.

    HTML 2

  3. spatial-game-assay spatial-game-assay Public

    🎮 In situ evolutionary game theory for spatial omics: inferring subclonal payoff matrices & Nash attractors in cancer.

    Python 2

  4. spatial-continuum-translational spatial-continuum-translational Public

    Evidence-linked translational extensions for spatial-continuum-oncology

    Python 1