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@RodriguezColmanLab

Rodriguez Colman Lab

Metabolism, stem cells and cancer. Academic lab deciphering metabolism as a regulator of cell fate.
README.md

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  1. CellPhenTracker CellPhenTracker Public

    Set of OrganoidTracker plugins to measure and analyse fluorescent intensities.

    Python

  2. NuclearIDTracker NuclearIDTracker Public

    Predicts cell types based on nucleus features (morphology, neighborhood). Allows for observing cell types in mouse small intestinal organoid time lapses.

    Jupyter Notebook

  3. KaryoMetab KaryoMetab Public

    Reproducible computational workflow for the joint inference of chromosomal instability (CIN) patterns and metabolic states from single-cell RNA-seq data

    R 2

Repositories

Showing 9 of 9 repositories
  • CellPhenTracker Public

    Set of OrganoidTracker plugins to measure and analyse fluorescent intensities.

    RodriguezColmanLab/CellPhenTracker's past year of commit activity
    Python 0 0 0 0 Updated Sep 16, 2026
  • dpct Public Forked from ilastik/dpct

    Dynamic Programming Cell Tracking Solver

    RodriguezColmanLab/dpct's past year of commit activity
    C++ 0 MIT 1 0 0 Updated Sep 9, 2026
  • napari-organoidtracker Public

    Allows you to read OrganoidTracker files into Napari

    RodriguezColmanLab/napari-organoidtracker's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 8, 2026
  • Metaboglobe Public

    Plot KEGG pathways with highlighted fluxes/metabolites

    RodriguezColmanLab/Metaboglobe's past year of commit activity
    Python 0 0 0 0 Updated Aug 24, 2026
  • NuclearIDTracker Public

    Predicts cell types based on nucleus features (morphology, neighborhood). Allows for observing cell types in mouse small intestinal organoid time lapses.

    RodriguezColmanLab/NuclearIDTracker's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 10, 2026
  • KaryoMetab Public

    Reproducible computational workflow for the joint inference of chromosomal instability (CIN) patterns and metabolic states from single-cell RNA-seq data

    RodriguezColmanLab/KaryoMetab's past year of commit activity
    R 2 0 0 0 Updated Jul 2, 2026
  • CMMCells Public

    Game for the open day of the CMM Utrecht

    RodriguezColmanLab/CMMCells's past year of commit activity
    Game Maker Language 0 MIT 0 0 0 Updated May 6, 2025
  • in_vitro_droplet_assay Public Forked from jehenninger/in_vitro_droplet_assay
    RodriguezColmanLab/in_vitro_droplet_assay's past year of commit activity
    Python 0 MIT 1 0 0 Updated Dec 13, 2023
  • .github Public
    RodriguezColmanLab/.github's past year of commit activity
    0 0 0 0 Updated Jan 25, 2023

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