Issues

• get_sample_csv File Has Decimal Numbers

  Teichlab/celltypist#169 · Filter by author DarioS opened on May 28, 2026
  1

• TypeError: annotate() got an unexpected keyword argument 'majority_voting'

  Teichlab/celltypist#167 · Filter by author shimonjude opened on Mar 26, 2026
  2

• Incompatibility scikit-learn 1.8?

  Teichlab/celltypist#164 · Filter by author bbimber opened on Dec 10, 2025
  11

• Applying Celltypist to sparse Visium HD: unexpected predictions and advice?

  Teichlab/celltypist#163 · Filter by author oghzzang opened on Oct 29, 2025
  6

• Programmatic Access to Cell Ontology Mappings for All CellTypist Model Cell Types

  Teichlab/celltypist#162 · Filter by author nick-youngblut opened on Oct 28, 2025
  3

• celltypist for Spatial transcriptmoic data (visium HD) annotation?

  Teichlab/celltypist#160 · Filter by author KunHHE opened on Sep 28, 2025
  1

• Annotation fails on sparse h5ad file if model trained with with_mean = False

  Teichlab/celltypist#159 · Filter by author danielsf opened on Aug 28, 2025
  4

• How are the built - in models trained?

  Teichlab/celltypist#158 · Filter by author Lucyyang1991 opened on Aug 11, 2025
  1

• Thoughts on adding SVM as a classifier?

  Teichlab/celltypist#157 · Filter by author derrik-gratz opened on Aug 1, 2025
  2

• TypeError: main() got an unexpected keyword argument 'use_gpu'

  Teichlab/celltypist#154 · Filter by author bbimber opened on Jun 23, 2025
  1

• models download when we want to use inhouse model

  Teichlab/celltypist#151 · Filter by author Hphilippon opened on May 5, 2025
  1

• How to train a celltypist model if the scRNA dataset is very large and unbanlanced?

  Teichlab/celltypist#150 · Filter by author Mark-wt opened on Apr 27, 2025
  1

• converting mouse symbols to IDs file similar to GENCODEv44_Gene_id2name.csv

  Teichlab/celltypist#149 · Filter by author alyamahmoud opened on Apr 14, 2025
  1

• Why are features in my custom CellTypist model converted to numbers (Entrez IDs)?

  Teichlab/celltypist#148 · Filter by author SSSJe opened on Apr 14, 2025
  1

• predictions after scvi integration

  Teichlab/celltypist#145 · Filter by author pirlowang opened on Feb 4, 2025
  3

• [help wanted with double-check] matrix in .X, expect log1p normalized expression to 10000 counts per cell

  Teichlab/celltypist#144 · Filter by author KunHHE opened on Dec 31, 2024
  3

• issue with importing the library

  Teichlab/celltypist#143 · Filter by author fahmadimoughari opened on Dec 20, 2024
  1

• Custom Model

  Teichlab/celltypist#142 · Filter by author nemeskolos opened on Nov 22, 2024
  2

• module 'celltypist' has no attribute 'extract_top_markers'

  Teichlab/celltypist#140 · Filter by author VittoriaDBocchi opened on Nov 15, 2024
  2

• why do fibroblast,endothelial,epithelial exit in immune_ALL_High_model?

  Teichlab/celltypist#139 · Filter by author echovv opened on Nov 13, 2024
  1

• Why we need to ensure the data format is adjusted with 10,000 for normalization correctness?

  Teichlab/celltypist#138 · Filter by author HelloWorldLTY opened on Oct 10, 2024
  1

• Cluster level annotation question

  Teichlab/celltypist#137 · Filter by author liuyang2006 opened on Oct 9, 2024
  1

• Celltypist's MIT license and GPL dependency leidenalg

  Teichlab/celltypist#135 · Filter by author PertuyF opened on Oct 1, 2024

• cluster free annotation

  Teichlab/celltypist#134 · Filter by author Flu09 opened on Sep 24, 2024
  1

• Failure to install

  Teichlab/celltypist#133 · Filter by author tricityandrew opened on Sep 10, 2024
  1