Issues

• raise exception if plate name is too long in IDT plate export

  closed in dev
  UC-Davis-molecular-computing/scadnano-python-package#348 · Filter by author dave-doty opened on Aug 25, 2026
  

• move the package to a src/ layout so tests exercise the installed package

  enhancement
  UC-Davis-molecular-computing/scadnano-python-package#345 · Filter by author dave-doty opened on Aug 10, 2026

• Consolidate packaging metadata into pyproject.toml

  closed in devenhancement
  UC-Davis-molecular-computing/scadnano-python-package#344 · Filter by author dave-doty opened on Aug 6, 2026

• check_pypi_packaging.yml uses deprecated python setup.py sdist bdist_wheel

  closed in dev
  UC-Davis-molecular-computing/scadnano-python-package#326 · Filter by author dave-doty opened on Jul 12, 2026

• ensure strand order stays same on edits

  Task

  UC-Davis-molecular-computing/scadnano-python-package#319 · Filter by author dave-doty opened on Feb 25, 2026

• export subset of strands

  enhancement
  UC-Davis-molecular-computing/scadnano-python-package#316 · Filter by author dave-doty opened on Aug 24, 2025
  2

  

• account for Helix Group rotation properly in oxdna/oxview export

  UC-Davis-molecular-computing/scadnano-python-package#309 · Filter by author dave-doty opened on Oct 15, 2024
  

• import (previously exported) cadnano design with paranemic crossover

  bug
  UC-Davis-molecular-computing/scadnano-python-package#308 · Filter by author dave-doty opened on Oct 13, 2024
  6

  

• implement thermodynamic analysis of stability of origami

  challengingenhancement
  UC-Davis-molecular-computing/scadnano-python-package#303 · Filter by author dave-doty opened on Apr 23, 2024

• separate Github actions for release notes and PyPi publishing

  invalid
  UC-Davis-molecular-computing/scadnano-python-package#302 · Filter by author dave-doty opened on Mar 30, 2024
  

• fix PyPi publishing

  bughigh priority
  UC-Davis-molecular-computing/scadnano-python-package#301 · Filter by author dave-doty opened on Mar 28, 2024
  1

  

• fix readthedocs updating

  bugclosed in devhigh priority
  UC-Davis-molecular-computing/scadnano-python-package#290 · Filter by author dave-doty opened on Dec 20, 2023
  4

  

• option to display some domains with dashed or squiggly lines

  enhancement
  UC-Davis-molecular-computing/scadnano-python-package#286 · Filter by author dave-doty opened on Oct 14, 2023

• option to make end offsets inclusive

  challenginghigh priorityinvalid
  UC-Davis-molecular-computing/scadnano-python-package#271 · Filter by author dave-doty opened on Aug 23, 2023

• fix unit test installation error

  bug
  UC-Davis-molecular-computing/scadnano-python-package#263 · Filter by author dave-doty opened on Jul 18, 2023
  

• Importing deletions on 5'/3' staple end from Cadnano

  enhancement
  UC-Davis-molecular-computing/scadnano-python-package#260 · Filter by author dave-doty opened on Jun 20, 2023
  1

  

• unit tests failing due to version incompatibility

  bughigh priority
  UC-Davis-molecular-computing/scadnano-python-package#259 · Filter by author dave-doty opened on Apr 4, 2023
  

• space out nucleotides in oxDNA export of loopouts

  invalid
  UC-Davis-molecular-computing/scadnano-python-package#253 · Filter by author dave-doty opened on Nov 30, 2022

• oxDNA Export with Helix Group Pitch / Yaw Bug

  bughigh priority
  UC-Davis-molecular-computing/scadnano-python-package#249 · Filter by author ajvetturini opened on Nov 25, 2022
  3

  

• shared binding domains

  challengingenhancement
  UC-Davis-molecular-computing/scadnano-python-package#248 · Filter by author dave-doty opened on Sep 30, 2022

• oxDNA file export with filename does not set extension

  UC-Davis-molecular-computing/scadnano-python-package#245 · Filter by author cgevans opened on Sep 9, 2022

• Design.from_scadnano_file has no option to suppress warnings for duplicate strand names

  UC-Davis-molecular-computing/scadnano-python-package#242 · Filter by author cgevans opened on Sep 9, 2022

• export Bioneer files

  enhancement
  UC-Davis-molecular-computing/scadnano-python-package#239 · Filter by author dave-doty opened on Aug 26, 2022

• raise exception on unpaired insertions/deletions in Design.inline_insertions_deletions and oxDNA/oxView/CanDo export

  invalid
  UC-Davis-molecular-computing/scadnano-python-package#227 · Filter by author dave-doty opened on Apr 5, 2022
  

• make tutorial that uses chained methods

  documentation
  UC-Davis-molecular-computing/scadnano-python-package#204 · Filter by author dave-doty opened on Nov 13, 2021