Issues

• BiocParallel Errors

  YosefLab/scone#107 · Filter by author TeodoraTockovska opened on Jan 4, 2022
  2

• CellRanger Metrics

  YosefLab/scone#106 · Filter by author CisnerosFernandez opened on Jul 26, 2021

• QC matrix

  YosefLab/scone#105 · Filter by author HaniJieunKim opened on Jan 23, 2021

• Cell Ranger alignment stats

  YosefLab/scone#104 · Filter by author iwillham opened on Apr 12, 2020
  3

• Calling scone with run=TRUE Error

  YosefLab/scone#102 · Filter by author e-arslan opened on Jul 30, 2019
  1

• Error in get_normalized due to no imputation / return_norm = "no"

  YosefLab/scone#101 · Filter by author diyadas opened on Dec 8, 2018
  3

• Error with memory

  YosefLab/scone#100 · Filter by author jgarces02 opened on Aug 28, 2018

• Error in score_matrix(expr = adjusted, eval_pcs = eval_pcs, eval_proj = eval_proj, : NA/Inf/NaN Expression Values

  YosefLab/scone#99 · Filter by author diyadas opened on Aug 20, 2018

• friendly error message when negcon params are all FALSE

  YosefLab/scone#96 · Filter by author allonw opened on Mar 13, 2018

• 'k' must satisfy 0 < k < min(nrow(A), ncol(A))

  enhancement
  YosefLab/scone#93 · Filter by author mbcole opened on Jan 19, 2018
  

• sconeReport

  YosefLab/scone#92 · Filter by author mbcole opened on Dec 28, 2017
  

• R-squared

  YosefLab/scone#91 · Filter by author drisso opened on Nov 22, 2017
  1

• Add Helpful Message when Control Gene Lists are Malformed

  enhancement
  YosefLab/scone#90 · Filter by author mbcole opened on Nov 7, 2017
  

• ezbake error when fnr_maxiter = 0

  YosefLab/scone#87 · Filter by author allonw opened on Jun 23, 2017

• scran "sizes" parameter

  YosefLab/scone#86 · Filter by author drisso opened on Jun 14, 2017
  4

• Warning when using default zero option

  bug
  YosefLab/scone#85 · Filter by author drisso opened on May 3, 2017

• Scaling Function Arguments

  YosefLab/scone#84 · Filter by author mbcole opened on Apr 6, 2017

• SconeExperiment for signature matrix should accept character vectors for poscon and negcon

  YosefLab/scone#83 · Filter by author drisso opened on Apr 4, 2017

• Report fails when expression feature is constant

  YosefLab/scone#79 · Filter by author mbcole opened on Feb 8, 2017
  

• Memory issues with parallel computing

  enhancement
  YosefLab/scone#76 · Filter by author drisso opened on Nov 14, 2016

• Additional tests

  YosefLab/scone#71 · Filter by author drisso opened on Oct 12, 2016

• bplapply memory issue when running scone(run=TRUE)

  YosefLab/scone#69 · Filter by author ckmah opened on Sep 19, 2016
  3

• Correct for QC and RUV simultaneously

  enhancement
  YosefLab/scone#68 · Filter by author drisso opened on Sep 2, 2016

• Allow multiple covariates

  enhancement
  YosefLab/scone#67 · Filter by author drisso opened on Sep 2, 2016
  3

• sample filter: default hard cutoffs

  YosefLab/scone#66 · Filter by author allonw opened on Aug 18, 2016