Issues

• scanpy is getting rid of .external and also has harmony now

  atarashansky/self-assembling-manifold#51 · Filter by author flying-sheep opened on Aug 13, 2026

• scalability for ~500K cells and no gui?

  atarashansky/self-assembling-manifold#50 · Filter by author Lil-Psilocybe opened on Feb 24, 2026

• AttributeError: 'numpy.ndarray' object has no attribute 'toarray'

  atarashansky/self-assembling-manifold#48 · Filter by author hl324 opened on Mar 24, 2025

• Division by zero warning during sum_norm

  atarashansky/self-assembling-manifold#46 · Filter by author georgyFenix opened on Jul 22, 2024

• default value of transpose in load_data should be set to False

  atarashansky/self-assembling-manifold#44 · Filter by author georgyFenix opened on Jul 18, 2024