fix: add-samples wrote to a flat Parquet the query engine never reads - #37

Merged

dlopez-bioinfo merged 14 commits into

fix/add-samples-partitioned-layout

Sep 9, 2026

Commits on Sep 8, 2026

refactor(storage): add a resolver for the variant Parquet layout
dlopez-bioinfo
committed
ebbc178
fix(update): merge added samples into the partitioned bucket files
dlopez-bioinfo
committed
0adef04
refactor(storage): route variant Parquet reads through the resolver
dlopez-bioinfo
committed
b3acce5
fix(check): report chromosomes stored in two layouts at once
dlopez-bioinfo
committed
18be233
fix(update): write the real sample count to the manifest after add
dlopez-bioinfo
committed
fec399c
test(update): cover add-samples against a partitioned database
dlopez-bioinfo
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8873053
fix(query): drop samples with no allele from the eligible set
dlopez-bioinfo
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8f3bf8e
fix(compact): survive a Parquet file whose rows are all dropped
dlopez-bioinfo
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3c77591
test: check query results against an independent oracle
dlopez-bioinfo
committed
1a1c97d
docs: document the variant layouts and the mixed-layout recovery
dlopez-bioinfo
committed
0dbfb69

Commits on Sep 9, 2026