Issues

• Epic 9 — CLI + maturin Packaging

  enhancement
  Task

  bbglab/openvariant#103 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Set up GitHub Actions CI for maturin wheel builds

  bbglab/openvariant#101 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Update Dockerfile for multi-stage Rust+Python build

  bbglab/openvariant#100 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Update pyproject.toml for maturin + finalize metadata

  bbglab/openvariant#99 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Rewrite CLI as thin Click wrapper

  bbglab/openvariant#98 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Epic 8 — Python Thin-Layer Rewrite

  enhancement
  Task

  bbglab/openvariant#97 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Add _core.pyi type stubs and py.typed marker

  bbglab/openvariant#96 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Rewrite task thin wrappers (cat, count, groupby)

  bbglab/openvariant#95 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Rewrite find_files Python thin wrapper

  bbglab/openvariant#94 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Rewrite Variant Python thin wrapper

  bbglab/openvariant#93 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Rewrite Annotation Python thin wrapper

  bbglab/openvariant#92 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Rewrite openvariant/__init__.py with lazy imports

  bbglab/openvariant#91 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Epic 7 — PyO3 Python Bindings

  enhancement
  Task

  bbglab/openvariant#90 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Implement PyO3 find_files binding

  bbglab/openvariant#89 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Implement PyO3 task bindings

  bbglab/openvariant#88 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Implement PyVariantReader PyO3 iterator

  bbglab/openvariant#87 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Implement PyAnnotation PyO3 binding

  bbglab/openvariant#86 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Epic 6 — Parallel Task Engine with Rayon

  enhancement
  Task

  bbglab/openvariant#85 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Implement groupby task in Rust

  bbglab/openvariant#84 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Implement count task in Rust

  bbglab/openvariant#83 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Implement cat task in Rust

  bbglab/openvariant#82 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Implement Rayon parallel orchestration

  bbglab/openvariant#81 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Epic 5 — Directory Walker with Annotation Cache

  enhancement
  Task

  bbglab/openvariant#80 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Implement Rust directory walker

  bbglab/openvariant#79 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0

• Epic 4 — File Reader Port (Chunked I/O, gzip, VCF)

  enhancement
  Task

  bbglab/openvariant#78 · Filter by author dmartmillan opened on Jun 2, 2026 · OpenVariant v2.0.0