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Merged
ccbogel merged 3 commits into from
Sep 13, 2026
Merged

Dev refs #1579

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bad775b
export refs button
ccbogel Sep 13, 2026
c33d3f7
exports refs button
ccbogel Sep 13, 2026
a3e1db6
Export references , ris format
ccbogel Sep 13, 2026
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35 changes: 17 additions & 18 deletions src/GUI_UIs/ui_manage_references.ui
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Original file line number Diff line number Diff line change
Expand Up @@ -88,7 +88,7 @@
<widget class="QPushButton" name="pushButton_delete_ref">
<property name="geometry">
<rect>
<x>560</x>
<x>600</x>
<y>8</y>
<width>30</width>
<height>30</height>
Expand Down Expand Up @@ -133,22 +133,6 @@
<string/>
</property>
</widget>
<widget class="QPushButton" name="pushButton_delete_unused_refs">
<property name="geometry">
<rect>
<x>600</x>
<y>8</y>
<width>30</width>
<height>30</height>
</rect>
</property>
<property name="toolTip">
<string>Delete all references that are not assigned to files</string>
</property>
<property name="text">
<string/>
</property>
</widget>
<widget class="QPushButton" name="pushButton_edit_ref">
<property name="geometry">
<rect>
Expand Down Expand Up @@ -201,6 +185,22 @@ Review after applying the function.</string>
<string/>
</property>
</widget>
<widget class="QPushButton" name="pushButton_export">
<property name="geometry">
<rect>
<x>530</x>
<y>8</y>
<width>30</width>
<height>30</height>
</rect>
</property>
<property name="toolTip">
<string>Export references</string>
</property>
<property name="text">
<string/>
</property>
</widget>
</widget>
</item>
</layout>
Expand All @@ -215,7 +215,6 @@ Review after applying the function.</string>
<tabstop>pushButton_edit_ref</tabstop>
<tabstop>pushButton_import</tabstop>
<tabstop>pushButton_delete_ref</tabstop>
<tabstop>pushButton_delete_unused_refs</tabstop>
</tabstops>
<resources/>
<connections/>
Expand Down
25 changes: 17 additions & 8 deletions src/qualcoder/GUI/ui_manage_references.py
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Form implementation generated from reading ui file 'C:\Users\salom\Downloads\r6\_ui_backup_20260826_012531\ui_manage_references.ui'
# Form implementation generated from reading ui file 'ui_manage_references.ui'
#
# Created by: PyQt6 UI code generator 6.10.2
#
Expand Down Expand Up @@ -44,7 +44,7 @@ def setupUi(self, Dialog_manage_references):
self.checkBox_hide_refs.setGeometry(QtCore.QRect(20, 40, 301, 23))
self.checkBox_hide_refs.setObjectName("checkBox_hide_refs")
self.pushButton_delete_ref = QtWidgets.QPushButton(parent=self.groupBox)
self.pushButton_delete_ref.setGeometry(QtCore.QRect(560, 8, 30, 30))
self.pushButton_delete_ref.setGeometry(QtCore.QRect(600, 8, 30, 30))
self.pushButton_delete_ref.setText("")
self.pushButton_delete_ref.setObjectName("pushButton_delete_ref")
self.pushButton_link = QtWidgets.QPushButton(parent=self.groupBox)
Expand All @@ -55,10 +55,6 @@ def setupUi(self, Dialog_manage_references):
self.pushButton_unlink_files.setGeometry(QtCore.QRect(410, 8, 30, 30))
self.pushButton_unlink_files.setText("")
self.pushButton_unlink_files.setObjectName("pushButton_unlink_files")
self.pushButton_delete_unused_refs = QtWidgets.QPushButton(parent=self.groupBox)
self.pushButton_delete_unused_refs.setGeometry(QtCore.QRect(600, 8, 30, 30))
self.pushButton_delete_unused_refs.setText("")
self.pushButton_delete_unused_refs.setObjectName("pushButton_delete_unused_refs")
self.pushButton_edit_ref = QtWidgets.QPushButton(parent=self.groupBox)
self.pushButton_edit_ref.setGeometry(QtCore.QRect(450, 8, 30, 30))
self.pushButton_edit_ref.setText("")
Expand All @@ -71,6 +67,10 @@ def setupUi(self, Dialog_manage_references):
self.pushButton_auto_link.setGeometry(QtCore.QRect(490, 8, 30, 30))
self.pushButton_auto_link.setText("")
self.pushButton_auto_link.setObjectName("pushButton_auto_link")
self.pushButton_export = QtWidgets.QPushButton(parent=self.groupBox)
self.pushButton_export.setGeometry(QtCore.QRect(530, 8, 30, 30))
self.pushButton_export.setText("")
self.pushButton_export.setObjectName("pushButton_export")
self.gridLayout.addWidget(self.groupBox, 4, 0, 1, 1)

self.retranslateUi(Dialog_manage_references)
Expand All @@ -83,7 +83,6 @@ def setupUi(self, Dialog_manage_references):
Dialog_manage_references.setTabOrder(self.pushButton_unlink_files, self.pushButton_edit_ref)
Dialog_manage_references.setTabOrder(self.pushButton_edit_ref, self.pushButton_import)
Dialog_manage_references.setTabOrder(self.pushButton_import, self.pushButton_delete_ref)
Dialog_manage_references.setTabOrder(self.pushButton_delete_ref, self.pushButton_delete_unused_refs)

def retranslateUi(self, Dialog_manage_references):
_translate = QtCore.QCoreApplication.translate
Expand All @@ -94,11 +93,21 @@ def retranslateUi(self, Dialog_manage_references):
self.pushButton_delete_ref.setToolTip(_translate("Dialog_manage_references", "Delete selected reference"))
self.pushButton_link.setToolTip(_translate("Dialog_manage_references", "Link selected files to selected reference"))
self.pushButton_unlink_files.setToolTip(_translate("Dialog_manage_references", "Unlink selected files from references"))
self.pushButton_delete_unused_refs.setToolTip(_translate("Dialog_manage_references", "Delete all references that are not assigned to files"))
self.pushButton_edit_ref.setToolTip(_translate("Dialog_manage_references", "Edit reference"))
self.pushButton_import.setToolTip(_translate("Dialog_manage_references", "Import references. RIS or NBIB (PubMed) format."))
self.pushButton_auto_link.setToolTip(_translate("Dialog_manage_references", "Automatically link references to unassigned file names.\n"
"Word matching uses words from reference title.\n"
"Strong matches with 70% or more matching words are linked.\n"
"Linking may be incorrect.\n"
"Review after applying the function."))
self.pushButton_export.setToolTip(_translate("Dialog_manage_references", "Export references"))


if __name__ == "__main__":
import sys
app = QtWidgets.QApplication(sys.argv)
Dialog_manage_references = QtWidgets.QDialog()
ui = Ui_Dialog_manage_references()
ui.setupUi(Dialog_manage_references)
Dialog_manage_references.show()
sys.exit(app.exec())
42 changes: 35 additions & 7 deletions src/qualcoder/manage_references.py
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Original file line number Diff line number Diff line change
Expand Up @@ -23,11 +23,12 @@

import datetime
import os
from pathlib import Path
from rispy import TAG_KEY_MAPPING
import logging
from operator import itemgetter
from PyQt6 import QtWidgets, QtCore, QtGui
import qtawesome as qta
import qtawesome as qta # see: https://pictogrammers.com/library/mdi/
import re
from shutil import copyfile
import webbrowser
Expand All @@ -36,7 +37,7 @@
from .GUI.ui_manage_references import Ui_Dialog_manage_references
from .confirm_delete import DialogConfirmDelete
from .information import DialogInformation
from .helpers import Message, extract_epub_fulltext
from .helpers import Message, extract_epub_fulltext, ExportDirectoryPathDialog
from .pdf_preview import DialogPdfPreview
from .manage_references_import import ATTACHMENT_EXTENSIONS, existing_reference_signatures, \
reference_signature
Expand Down Expand Up @@ -113,12 +114,10 @@ def __init__(self, app_, parent_text_edit):
self.ui.pushButton_edit_ref.pressed.connect(self.edit_reference)
self.ui.pushButton_delete_ref.setIcon(qta.icon('mdi6.delete-outline', options=[{'scale_factor': 1.4}]))
self.ui.pushButton_delete_ref.pressed.connect(self.delete_reference)
self.ui.pushButton_delete_unused_refs.setIcon(
qta.icon('mdi6.file-document-remove-outline', options=[{'scale_factor': 1.4}]))
self.ui.pushButton_delete_unused_refs.setEnabled(False)
self.ui.pushButton_delete_unused_refs.hide()
self.ui.pushButton_auto_link.setIcon(qta.icon('mdi6.magic-staff', options=[{'scale_factor': 1.4}]))
self.ui.pushButton_auto_link.pressed.connect(self.auto_link_files_to_references)
self.ui.pushButton_export.setIcon(qta.icon('mdi6.export', options=[{'scale_factor': 1.4}]))
self.ui.pushButton_export.pressed.connect(self.export_references)

self.get_data()
self.ui.tableWidget_refs.setTabKeyNavigation(False)
Expand Down Expand Up @@ -753,14 +752,43 @@ def add_fields(self):
return
cur = self.app.conn.cursor()
for s in selection:
print(s)
short_tag, long_tag = s['name'].split(": ")
cur.execute("insert into ris (risid,tag,longtag, value) values(?,?,?,'')", [int(ris_id), short_tag, long_tag])
self.app.conn.commit()
self.get_data()
self.app.delete_backup = False
self._emit_project_table_changes(['attribute_type'])

def export_references(self):
""" Export references to .ris file. """

exp_directory = ExportDirectoryPathDialog(self.app, "QC_references.ris")
filepath = exp_directory.filepath
if filepath is None:
return
lines = []
cur = self.app.conn.cursor()
cur.execute("select distinct risid from ris order by risid asc")
ris_ids = cur.fetchall()
for ris_id in ris_ids:
# First RIS key value is TY
cur.execute("SELECT value from ris where tag='TY' and risid=?", [ris_id[0]])
ty = cur.fetchone()
if ty:
lines.append(f"TY - {ty[0]}")
else:
lines.append("TY - JOUR") # JOUR a default value
cur.execute("SELECT tag,value from ris where tag != 'TY' and risid=?", [ris_id[0]])
res = cur.fetchall()
for r in res:
lines.append(f"{r[0]} - {r[1]}")
lines.append("ER - ") # End record
with open(filepath, 'w', encoding='utf-8') as f:
for line in lines:
print(line, file=f)
self.parent_text_edit.append(_("References exported: ") + filepath)
Message(self.app, _("References exported"), filepath).exec()

def import_references(self):
"""
Asks for the source (file or Zotero) and launches the matching importer. File imports
Expand Down
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