Issues

• License

  drighelli/SpatialExperiment#175 · Filter by author rcastelo opened on Apr 30, 2026
  3

• H5CX__pop_common: Assertion `head && *head' failed error with install SpatialExperiment package

  drighelli/SpatialExperiment#174 · Filter by author curtishongbio-blip opened on Dec 3, 2025
  1

• Feature request: ability to map different rowData to different assays

  drighelli/SpatialExperiment#173 · Filter by author sgosline opened on Aug 21, 2025
  1

• example("SpatialExperiment") requires suggested packages but doesn't check for this

  drighelli/SpatialExperiment#163 · Filter by author PeteHaitch opened on Jan 20, 2025

• can not install the SpatialExperiment in R 4.1.3

  drighelli/SpatialExperiment#162 · Filter by author honghh2018 opened on Dec 13, 2024

• constructor loses mainExpName and altExpNames from SCE

  drighelli/SpatialExperiment#161 · Filter by author LiNk-NY opened on Dec 9, 2024

• Allow additional SpatialImage file extensions

  drighelli/SpatialExperiment#159 · Filter by author andrewGhazi opened on Nov 4, 2024
  2

• TreeSummarizedExperiment support

  drighelli/SpatialExperiment#158 · Filter by author TuomasBorman opened on Oct 4, 2024
  12

• Unexpected error when spe$sample_id is a factor

  drighelli/SpatialExperiment#151 · Filter by author Nick-Eagles opened on May 29, 2024
  1

• error adding image

  drighelli/SpatialExperiment#147 · Filter by author alfonsosaera opened on Jan 17, 2024
  7

• spatial proteomics data to SPE

  drighelli/SpatialExperiment#146 · Filter by author cathalgking opened on Jan 15, 2024
  1

• More flexible colnames of imgData

  drighelli/SpatialExperiment#142 · Filter by author senbaikang opened on Sep 29, 2023

• Deprecate BumpyMatrix functionality for molecule-based data

  drighelli/SpatialExperiment#141 · Filter by author lmweber opened on Sep 2, 2023
  2

  

• SpatialImage doc questions

  drighelli/SpatialExperiment#131 · Filter by author lgeistlinger opened on Nov 21, 2022
  2

  

• restructure imgData with flexible metadata

  drighelli/SpatialExperiment#127 · Filter by author HelenaLC opened on Nov 17, 2022

• move read10xVisium to TENxIO

  drighelli/SpatialExperiment#126 · Filter by author HelenaLC opened on Nov 17, 2022
  27

  

• read10xVisium tries to add outs to my paths

  drighelli/SpatialExperiment#123 · Filter by author LTLA opened on Nov 2, 2022
  3

• Could imgData also store other image classes?

  drighelli/SpatialExperiment#121 · Filter by author lgeistlinger opened on Oct 26, 2022
  1

• imgData slot restrictions

  drighelli/SpatialExperiment#120 · Filter by author lgeistlinger opened on Oct 26, 2022
  5

• How to SpatialFeaturePlot for Aggregated Samples?

  drighelli/SpatialExperiment#119 · Filter by author chancharikmitra opened on Oct 25, 2022
  2

• Latest Spaceranger 2.0 output structure change breaks read10xVisium

  drighelli/SpatialExperiment#116 · Filter by author raysinensis opened on Oct 5, 2022
  1

  

• Convert Seurat to SpatialExperiment

  drighelli/SpatialExperiment#115 · Filter by author MarcElosua opened on Sep 19, 2022
  3

• Dependency stack

  drighelli/SpatialExperiment#114 · Filter by author lgeistlinger opened on Sep 7, 2022
  4

• ?imgRaster should offer a choice between the SpatialExperiment and SpatialImage methods

  drighelli/SpatialExperiment#111 · Filter by author LTLA opened on Aug 10, 2022
  5

• documentation needs update

  drighelli/SpatialExperiment#106 · Filter by author drighelli opened on May 24, 2022