Issues

• Add topic U24CA289073

  epurdom/clusterExperiment#274 · Filter by author bd4everyone opened on Apr 2, 2025

• Add topic U24CA289073

  epurdom/clusterExperiment#273 · Filter by author bd4everyone opened on Apr 2, 2025
  1

• Leiden based clustering

  epurdom/clusterExperiment#272 · Filter by author JensFGG opened on Oct 18, 2024

• ERROR: dependency ‘howmany’ is not available for package ‘clusterExperiment’

  epurdom/clusterExperiment#271 · Filter by author aarzalluz opened on Apr 25, 2024
  1

• Seurat Custom Functions

  epurdom/clusterExperiment#270 · Filter by author pshukla63 opened on Jan 29, 2024
  1

• Installation of clusterexperiment fails on 3.14 (BiocManager 1.30.17), R 4.1.3 (2022-03-10) MacOS

  epurdom/clusterExperiment#268 · Filter by author JesseRop opened on May 3, 2022
  1

• MinSize in merging step

  enhancement
  epurdom/clusterExperiment#264 · Filter by author epurdom opened on Mar 11, 2019

• calling RSEC() function error: Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘primaryCluster’ for signature ‘"NULL"’

  epurdom/clusterExperiment#263 · Filter by author siyao-liu opened on Jan 19, 2019
  5

• Fix clusterContrasts so can give whichCluster arg

  epurdom/clusterExperiment#258 · Filter by author epurdom opened on Oct 10, 2018

• Function for finding correlation between cluster centroids

  enhancement
  epurdom/clusterExperiment#252 · Filter by author epurdom opened on Jun 28, 2018

• Make function to check if two clusterings are a permutation of each other

  enhancement
  epurdom/clusterExperiment#251 · Filter by author epurdom opened on Jun 28, 2018

• Add violin plot functionality to plotFeatureBoxplot

  enhancement
  epurdom/clusterExperiment#248 · Filter by author epurdom opened on Jun 6, 2018

• plotDendrogram takes a LONG time with large number of cells

  enhancement
  epurdom/clusterExperiment#247 · Filter by author epurdom opened on May 29, 2018

• speed up plotClusters by moving to C++

  enhancement
  epurdom/clusterExperiment#245 · Filter by author epurdom opened on May 18, 2018

• Store counts as integers

  enhancement
  epurdom/clusterExperiment#238 · Filter by author epurdom opened on Mar 15, 2018
  2

• use fastcluster for hierarchical clustering

  enhancement
  epurdom/clusterExperiment#237 · Filter by author epurdom opened on Mar 15, 2018
  5

• plotHeatmap not working with NMF development version

  epurdom/clusterExperiment#235 · Filter by author rufletch opened on Jan 26, 2018
  16

• Sort the values of the cluster names in legend of plotDendrogram

  enhancement
  epurdom/clusterExperiment#230 · Filter by author epurdom opened on Oct 12, 2017

• Using distFun in clusterMany shouldn't use global.env()

  bug
  epurdom/clusterExperiment#229 · Filter by author epurdom opened on Oct 6, 2017

• Use pheatmap instead of aheatmap?

  enhancement
  epurdom/clusterExperiment#224 · Filter by author epurdom opened on Sep 29, 2017
  4

• inefficient in findBestK=TRUE

  enhancement
  epurdom/clusterExperiment#223 · Filter by author epurdom opened on Sep 29, 2017

• implement gap statistic

  enhancement
  epurdom/clusterExperiment#222 · Filter by author epurdom opened on Sep 29, 2017

• getClusterManyParams allows to subset

  enhancement
  epurdom/clusterExperiment#218 · Filter by author epurdom opened on Sep 25, 2017

• argument "breaks" in plotHeatmap function for negative values

  epurdom/clusterExperiment#215 · Filter by author fperraudeau opened on Jul 20, 2017
  1

• dimReduce and scaling

  epurdom/clusterExperiment#213 · Filter by author epurdom opened on Jun 30, 2017
  2