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Pull requests: loculus-project/loculus

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Pull requests list

chore(deps-dev): bump fast-uri from 3.1.5 to 3.1.7 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7234 opened Sep 2, 2026 by dependabot Bot Loading…
chore(deps): bump fast-uri from 3.1.5 to 3.1.7 in /docs in the npm_and_yarn group across 1 directory dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7233 opened Sep 2, 2026 by dependabot Bot Loading…
chore(deps-dev): bump @humanfs/node from 0.16.6 to 0.16.8 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7232 opened Sep 2, 2026 by dependabot Bot Loading…
chore(deps): bump @humanfs/node from 0.16.6 to 0.16.8 in /keycloak/keycloakify dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7231 opened Sep 2, 2026 by dependabot Bot Loading…
chore(deps-dev): bump @humanfs/node from 0.16.6 to 0.16.8 in /integration-tests dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7230 opened Sep 2, 2026 by dependabot Bot Loading…
chore(deps): bump the patch group in /website with 6 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7229 opened Sep 2, 2026 by dependabot Bot Loading…
chore(deps): bump actions/setup-java from 5 to 6 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#7228 opened Sep 2, 2026 by dependabot Bot Loading…
chore(deps): bump com.github.luben:zstd-jni from 1.5.7-15 to 1.5.7-16 in /backend dependencies Pull requests that update a dependency file java Pull requests that update Java code
#7227 opened Sep 2, 2026 by dependabot Bot Loading…
chore(deps): bump the minor group in /website with 5 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7226 opened Sep 2, 2026 by dependabot Bot Loading…
chore(deps): bump the patch group in /backend with 2 updates dependencies Pull requests that update a dependency file java Pull requests that update Java code
#7225 opened Sep 2, 2026 by dependabot Bot Loading…
chore(deps-dev): bump eslint-plugin-unicorn from 73.0.0 to 74.0.0 in /integration-tests dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7224 opened Sep 2, 2026 by dependabot Bot Loading…
chore(deps-dev): bump the minorandpatch group in /integration-tests with 6 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7223 opened Sep 2, 2026 by dependabot Bot Loading…
chore(deps): bump org.jetbrains.exposed:exposed-bom from 1.4.0 to 1.5.0 in /backend in the minor group dependencies Pull requests that update a dependency file java Pull requests that update Java code
#7222 opened Sep 2, 2026 by dependabot Bot Loading…
feat(deposition): make loculus metadata field names configurable and ENA db parameters Final deposition related to ENA/INSDC deposition
#7221 opened Sep 2, 2026 by anna-parker Contributor Loading…
2 of 3 tasks
10
fix(deposition): use e-utilities for nuccore visibility checks deposition related to ENA/INSDC deposition
#7220 opened Sep 2, 2026 by anna-parker Contributor Loading…
3 tasks done
9
fix(deployment): retry transient errors when downloading config URLs deployment Code changes targetting the deployment infrastructure
#7219 opened Sep 2, 2026 by corneliusroemer Contributor • Draft
2
feat(website): Mirror backend filename validation in website deployment Code changes targetting the deployment infrastructure website Tasks related to the web application
#7218 opened Sep 2, 2026 by tombch Collaborator Loading…
1 of 3 tasks
11
feat(ena-deposition): split up ENA integration tests into liveness and submission tests, create a helpers file deposition related to ENA/INSDC deposition
#7217 opened Sep 2, 2026 by anna-parker Contributor Loading…
3 tasks
12
chore(deps): bump types-python-dateutil from 2.9.0.20260716 to 2.9.0.20260807 in /preprocessing/nextclade conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#7216 opened Sep 1, 2026 by dependabot Bot Loading…
chore(deps): bump types-pyyaml from 6.0.12.20260518 to 6.0.12.20260815 in /preprocessing/nextclade conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#7215 opened Sep 1, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group in /preprocessing/nextclade with 9 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#7214 opened Sep 1, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group across 1 directory with 17 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#7213 opened Sep 1, 2026 by dependabot Bot Loading…
chore(deps): bump pandas from 2.3.3 to 3.0.5 in /ingest conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#7212 opened Sep 1, 2026 by dependabot Bot Loading…
chore(deps-dev): bump ruff from 0.16.0 to 0.16.5 in /loculus-silo in the minorandpatch group dependencies Pull requests that update a dependency file python Pull requests that update python code
#7211 opened Sep 1, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group in /ingest with 6 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#7210 opened Sep 1, 2026 by dependabot Bot Loading…
ProTip! What’s not been updated in a month: updated:<2026-08-02.