Issues

• ProcessGsRawData just randomly starts in the night (sometimes)

  bug
  molgenis/NGS_Automated#356 · Filter by author RoanKanninga opened on Mar 26, 2026

• CopyProjectDataToPrm is sometimes not producing a projectDataCopiedToPrm on tmp06

  molgenis/NGS_Automated#355 · Filter by author RoanKanninga opened on Feb 16, 2026

• PullAndProcessGsAnalysisData.sh fails to process other batches when one batch is incomplete

  molgenis/NGS_Automated#311 · Filter by author pneerincx opened on May 1, 2024
  

• trackandtrace curlresponse in shared function

  molgenis/NGS_Automated#201 · Filter by author RoanKanninga opened on Feb 4, 2021

• CopyProjectDataToPrm: when checksum has failed the wrong path to file is showed

  bug
  molgenis/NGS_Automated#194 · Filter by author RoanKanninga opened on Oct 19, 2020

• Fix: Error handling for generate.sh

  molgenis/NGS_Automated#187 · Filter by author pneerincx opened on Jun 2, 2020

• concordancecheck should accept all .vcf.gz

  molgenis/NGS_Automated#164 · Filter by author RoanKanninga opened on Jan 27, 2020

• concordancecheck output link in DAT06

  molgenis/NGS_Automated#150 · Filter by author kdelange opened on Oct 15, 2019

• FATAL error demultiplexing.sh CURLRESPONSE

  molgenis/NGS_Automated#127 · Filter by author kdelange opened on May 8, 2019

• gendercheckfailed + rejectedsamples should also be added to umcg-atd.cfg

  molgenis/NGS_Automated#122 · Filter by author RoanKanninga opened on Apr 10, 2019

• add samplesheet to rawdata in genomescan runs

  molgenis/NGS_Automated#116 · Filter by author RoanKanninga opened on Mar 25, 2019

• when count on prm and tmp are not the same show differences

  molgenis/NGS_Automated#110 · Filter by author RoanKanninga opened on Jan 28, 2019

• not possible to run startPipeline.sh with a samplesheet that contains more than 1 project

  bug
  molgenis/NGS_Automated#108 · Filter by author RoanKanninga opened on Dec 20, 2018

• Change lockfile logic.

  molgenis/NGS_Automated#92 · Filter by author pneerincx opened on Sep 29, 2018

• get proper notification when something is wrong in demultiplexing

  molgenis/NGS_Automated#82 · Filter by author RoanKanninga opened on Aug 7, 2018