MPFI Data Science
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Repositories
- DSB-Volume Public
A Dragonfly 3D World program to separate dendritic spine heads given a dendrite segmentation from serial electron microscopy data.
- DSB-Proofreader Public
Proofreader tool for the DSB project. Remove and adjust spine head center candidates and compute head radii in 3D reconstructions of serial electron microscopy data.
- DSB-Radius Public
A semi-automatic Dragonfly 3D World plugin to compute the radius of dendritic spine heads in electron microscopy data. Requires a 3D mesh reconstruction of a dendrite.
- 3D-Pancake Public
A 3D implementation of the following paper, made as a plugin for the Dragonfly 3D World software: https://www.frontiersin.org/articles/10.3389/fnana.2013.00020/full#F2
- AnnotationScaler Public
A Dragonfly 3D World plugin to scale annotations. Useful when changing the voxel spacing of 3D image data.
- GoldInAndOut Public
🔬🥇🧠🍔 Automated Gold Particle Analysis For Freeze Fracture Replica Electron Microscopy Images
- Syn2Ves-User Public
🧠🔍📊 A program to pair synapses with vesicles based on position, and quantify the alignment of these pairings.
- GoldDigger Public archive
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