Issues

• Create a health check for controllers

  nysbc/appion#28 · Filter by author jpellman opened on Dec 11, 2025

• Add support for motioncor2/motioncor3's Serial Flag for large runs / batch multiple images into 1 command invocation

  nysbc/appion#27 · Filter by author jpellman opened on Aug 13, 2025
  7

• Choose the partition to submit Dasks workers to based on a criterion

  nysbc/appion#26 · Filter by author jpellman opened on Aug 6, 2025
  1

• Give the control loop the ability to apply multiple filters to the tasklist before processing starts

  nysbc/appion#25 · Filter by author jpellman opened on Aug 6, 2025

• Issue with dask-jobqueue workers getting stuck

  nysbc/appion#24 · Filter by author jpellman opened on Aug 5, 2025
  2

• Have the Appion control loop exit if the session for the run is inactive and all images have been processed

  enhancement
  nysbc/appion#23 · Filter by author jpellman opened on Jul 31, 2025

• GatanK3 dimensions for dark reference generation are wrong

  bug
  nysbc/appion#22 · Filter by author jpellman opened on Jul 29, 2025

• Check if logging handler has been attached to logger in pre/post-task

  bug
  nysbc/appion#21 · Filter by author jpellman opened on Jul 28, 2025

• Reconsider how run directories work

  enhancement
  nysbc/appion#18 · Filter by author jpellman opened on Jul 14, 2025

• Add type hints to all functions that don't have them as of 2025.07.11b

  enhancementlow
  nysbc/appion#16 · Filter by author jpellman opened on Jul 11, 2025

• Refactor ctffind4 pipeline

  bugmedium
  nysbc/appion#12 · Filter by author jpellman opened on Jul 8, 2025
  1

• Refactor/reimplement uploadImages.py

  buglow
  nysbc/appion#11 · Filter by author jpellman opened on Jul 8, 2025
  1

• Ensure that all updates in motioncor2 post-task are atomic

  bugmedium
  nysbc/appion#10 · Filter by author jpellman opened on Jun 26, 2025
  2

• Make sure that all files have SPDX copyright notices

  documentationlow
  nysbc/appion#8 · Filter by author jpellman opened on Jun 4, 2025

• Add support for ctffind5

  enhancementmedium
  nysbc/appion#6 · Filter by author jpellman opened on Jun 4, 2025
  2

• Add support for motioncor3

  enhancementmedium
  nysbc/appion#5 · Filter by author jpellman opened on Jun 4, 2025