Repository navigation
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This branch is a rewrite of how
compareDatasets()works. The functionreadTrackMateXML()now uses{xml2}rather than{XML}for future-proofing. This change means slower read times because it (currently) does not make use of serialisation. Nonetheless, the pipeline of a single file through read and all analysis steps can be parallelised at the level ofcompareDatasets(). This yields a seven-fold increase in speed.Read times for single datasets are slower and this worsens with size of dataset. A possibility for the future is to have two read functions, one for use with
compareDatasets()and the other as standalone.Several other fixes for reports were incorporated.