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raphaelrubrice/README.md

Hi, I'm Raphaël Rubrice !


Fabian Theis Lab @ Helmholtz Munich and Guy Wolf Lab @ Mila. AI-assisted experimental design, Virtual cell and tissue modeling.

Current/Recent projects :

Cool stuff :

  • Received the Impact+ Doctoral Scholarship
  • Accepted for a PhD at Université de Montréal (Guy Wolf's lab @ Mila)
  • Master's thesis in the TheisLab @ Helmoltz Munich
  • Got accepted into ENS Paris-Saclay's MVA coursework
  • Laureate of the PR[AI]RIE Institute Excellence Scholarship
  • Published in the Journal Artificial Intelligence in the Life Sciences : A machine learning framework for the prediction and analysis of bacterial antagonism in biofilms using morphological descriptors
  • Got an internship at Dassault Systèmes, the topic ? Explainable clustering for clinical data
  • Our main project of the year during IODAA got accepted for presentation at the 1st AI for Animal Science Conference at ETH Zurich (2025)
  • With a few friends from AgroParisTech, we won the AI Methodology Award at the 2025 Owkin & Servier AI Hackathon for Glioblastoma Research
  • Gave a presentation at the Micalis Institute on the work I've done on the biofilm antagonism prediction model

Contacts :

Email

linkedin logo

googlescholar logo


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  1. scVAE_mva2025 scVAE_mva2025 Public

    Github for the project on VAEs for single cell data for the "Introduction to Probabilistic Graphical Models and Deep Generative Models" course of the MVA.

    Jupyter Notebook

  2. HVAE HVAE Public

    Hyperspherical Variational Auto-Encoders

    Jupyter Notebook

  3. ReproHackathon_G6 ReproHackathon_G6 Public

    Repository made for the ReproHackathon course of the Master 2 AMI2B program (Computational Biology) at Paris-Saclay University. The goal is to reproduce part of the results shown in : https://doi.o…

    R 2 1

  4. TELLAM TELLAM Public

    Pipeline for Transposable Elements Locus Level Analysis.

    Python

  5. lauronta/projet_fil_rouge_afz lauronta/projet_fil_rouge_afz Public

    Jupyter Notebook 3