Skip to content

Pull requests: scverse/squidpy

New pull request New
25 Open 531 Closed
25 Open 531 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Update template to v0.8.0
#1242 opened Jul 17, 2026 by scverse-bot Contributor Loading…
bugfix in _calculate_neighborhood_profile in gr/_niche.py
#1229 opened Jun 25, 2026 by shashkat Loading…
@selmanozleyen
1
[pre-commit.ci] pre-commit autoupdate
#1226 opened Jun 22, 2026 by pre-commit-ci Bot Loading…
1
refactor(datasets): use the shared scverse-misc dataset registry + downloader
#1213 opened Jun 15, 2026 by timtreis Member Loading…
10
Multi-slide pooled fit_stain_reference
#1209 opened Jun 14, 2026 by timtreis Member Loading…
@timtreis
5
feat: stalign with a fit apply pattern. release-added
#1195 opened Jun 1, 2026 by selmanozleyen Member Loading…
@selmanozleyen
12
Add spatialdata-plot delegation backend (gated by feature flag)
#1173 opened May 12, 2026 by timtreis Member • Draft
@timtreis
1
Draft: add contour-based ring density and smooth signed-distance density for SpatialData
#1163 opened Apr 16, 2026 by hutaobo • Draft
1
4
General purpose sq.tl.align() function with STAlign core logic
#1162 opened Apr 16, 2026 by timtreis Member Loading…
3
Feat/gene imputation
#1161 opened Apr 16, 2026 by MDLDan Contributor • Draft
2
Add pluggable backend dispatch system
#1151 opened Apr 7, 2026 by Intron7 Member • Draft
16
feat: remove ligrec parallelize
#1125 opened Feb 23, 2026 by selmanozleyen Member Loading…
@selmanozleyen
26
Improved sliding windows
#1116 opened Feb 10, 2026 by schrf Loading…
1
@selmanozleyen
12
Experimental Feature: Function delegation to rapids_singlecell when gpu is available
#1093 opened Jan 14, 2026 by selmanozleyen Member • Draft
@selmanozleyen
22
Add new spatial graph features and tests (closes #901)
#1091 opened Jan 3, 2026 by luckyy14 Loading…
1
Add Pytest Benchmarks Feature pytest-benchmark
#1070 opened Dec 1, 2025 by selmanozleyen Member • Draft
1
update var by dist normalization
#1065 opened Nov 20, 2025 by LLehner Member Loading…
5
Use the correct image for scatter plots with alternate spatial bases
#1032 opened Sep 8, 2025 by obriencshl Loading…
5
Add COZI to nhood_enrichment()
#1023 opened Aug 12, 2025 by chiarasch Loading…
1 task done
@selmanozleyen
7
Adding Benchmarks benchmark enhancement ✨ New feature or request
#1016 opened Jul 10, 2025 by selmanozleyen Member Loading…
@flying-sheep @selmanozleyen
5
sq.pp.filter_cells for SpatialData
#1011 opened Jun 18, 2025 by selmanozleyen Member Loading…
1 task done
1
1
Add filter function that subsets the entire object
#967 opened Mar 4, 2025 by timtreis Member • Draft
1
@selmanozleyen
1
Sliding window improvements
#931 opened Dec 25, 2024 by mossishahi Collaborator • Draft
9
Add method to calculate embeddings for variable by distance aggregation feature PR introduces a new feature squidpy2.0 Everything releated to a Squidpy 2.0 release
#807 opened Mar 4, 2024 by LLehner Member Loading…
2 tasks
4
fix the bug of relative coordinates
#572 opened Jun 17, 2022 by JiaShun-Xiao Loading…
8
ProTip! Find all pull requests that aren't related to any open issues with -linked:issue.