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Breeding-Insight / MADCATS

Command-line tool that turns targeted-sequencing FASTQs into MADC tables of microhaplotypes and their read counts, counting each panel’s designed alleles and discovering new ones.

python bioinformatics genomics command-line-tool polyploid amplicon-sequencing targeted-sequencing plant-breeding genotyping microhaplotypes dartag

Updated Oct 28, 2026
Python

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