Issues

• [BUG] A short description of the bug

  LieberInstitute/spatialLIBD#117 · Filter by author HelenaLC opened on Nov 25, 2025

• How to run_app with download file

  LieberInstitute/spatialLIBD#116 · Filter by author bitcometz opened on Oct 14, 2025

• Miscellaneous error on https://libd.shinyapps.io/spatialLIBD/ when accessing genes (interactive)

  LieberInstitute/spatialLIBD#114 · Filter by author matt-sd-watson opened on Jul 29, 2025
  1

• [BUG] Reverse dependency check failure for cowplot

  LieberInstitute/spatialLIBD#113 · Filter by author clauswilke opened on Jun 13, 2025

• Improve spatial registration guide explanation of annotation

  LieberInstitute/spatialLIBD#112 · Filter by author lahuuki opened on Jun 5, 2025
  1

• Confusing warning message in spatialLIBD::gene_set_enrichment

  LieberInstitute/spatialLIBD#111 · Filter by author boyiguo1 opened on May 7, 2025
  

• [BUG] special character in values of var_registration variable leads to unexpected behavior in registration_pseudobulk

  LieberInstitute/spatialLIBD#103 · Filter by author boyiguo1 opened on Mar 21, 2025
  

• Switch to using rlang and cli

  enhancement
  LieberInstitute/spatialLIBD#70 · Filter by author lcolladotor opened on Dec 1, 2023 · bioc v3.21

• Translate course and intro documentation to Spanish

  enhancement
  LieberInstitute/spatialLIBD#69 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.23

• Design a 2 day workshop / short course

  enhancement
  LieberInstitute/spatialLIBD#68 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.22

• Create video guide for spatialLIBD web applications

  enhancement
  LieberInstitute/spatialLIBD#67 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.23

• Add support for inspecting colors to visual impairment + guide for choosing colors

  enhancement
  LieberInstitute/spatialLIBD#66 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.23

• Allow users to write custom shiny code for web applications

  enhancement
  LieberInstitute/spatialLIBD#65 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.23

• Determine limits of dataset size that can be supported by shinyapps.io + document Amazon AWS deployment

  enhancement
  LieberInstitute/spatialLIBD#64 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.22

• Expand utilities for exploring spatial data

  enhancement
  LieberInstitute/spatialLIBD#63 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.22

• Modularize interactive code

  enhancement
  LieberInstitute/spatialLIBD#62 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.22

• Add support for non-Visium data and/or SpatialFeatureExperiment

  enhancement
  LieberInstitute/spatialLIBD#61 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.22
  3

• Enhance frame limit detection

  enhancement
  LieberInstitute/spatialLIBD#60 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.21

• Create guide for shinyapps.io deployment

  enhancement
  LieberInstitute/spatialLIBD#59 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.21

• Refactor guide for external datasets

  enhancement
  LieberInstitute/spatialLIBD#58 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.21

• Add support for dream by Gabriel Hoffman

  enhancement
  LieberInstitute/spatialLIBD#57 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.21

• Improve data access organization and documentation

  enhancement
  LieberInstitute/spatialLIBD#56 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.20
  3

• Deposit published data on ExperimentHub

  enhancement
  LieberInstitute/spatialLIBD#55 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.20

• Add support for visualizing stitched capture areas

  enhancement
  LieberInstitute/spatialLIBD#53 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.20

• Improve code coverage

  enhancement
  LieberInstitute/spatialLIBD#52 · Filter by author lcolladotor opened on Nov 30, 2023 · bioc v3.20