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Center For Medical Genetics Ghent - Nextflow workflows

Center For Medical Genetics Ghent - Ghent University Hospital - Nextflow workflows

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  1. structural structural Public

    A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

    Nextflow 28 5

  2. smallvariants smallvariants Public

    A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

    Nextflow 13 5

  3. preprocessing preprocessing Public

    Preprocessing workflow for sequencing data at CMGG

    Nextflow 5 7

Repositories

Showing 10 of 12 repositories
  • configs Public

    Nextflow config files

    nf-cmgg/configs's past year of commit activity
    0 MIT 1 1 1 Updated Sep 23, 2026
  • preprocessing Public

    Preprocessing workflow for sequencing data at CMGG

    nf-cmgg/preprocessing's past year of commit activity
    Nextflow 5 MIT 7 5 1 Updated Sep 23, 2026
  • test-datasets Public

    Test datasets for unit tests with the nf-cmgg pipelines

    nf-cmgg/test-datasets's past year of commit activity
    Python 0 MIT 4 0 1 Updated Sep 23, 2026
  • plugin Public

    A Nextflow plugin for internal use at CMGG

    nf-cmgg/plugin's past year of commit activity
    Groovy 1 Apache-2.0 1 0 1 Updated Sep 17, 2026
  • smallvariants Public

    A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

    nf-cmgg/smallvariants's past year of commit activity
    Nextflow 13 MIT 5 20 4 Updated Sep 9, 2026
  • structural Public

    A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

    nf-cmgg/structural's past year of commit activity
    Nextflow 28 MIT 5 19 1 Updated Sep 9, 2026
  • report Public

    A post-processing reporting pipeline for internal use at CMGG

    nf-cmgg/report's past year of commit activity
    Nextflow 0 MIT 5 0 0 Updated Aug 25, 2026
  • exomecnv Public

    A nextflow pipeline for calling CNVs in probe-enriched sequencing workflows

    nf-cmgg/exomecnv's past year of commit activity
    Nextflow 14 MIT 6 2 2 Updated Aug 17, 2026
  • sampletracking Public

    CMGG Sampletracking workflow

    nf-cmgg/sampletracking's past year of commit activity
    Nextflow 0 MIT 2 2 2 Updated Aug 4, 2026
  • wisecondorx Public

    A nextflow pipeline for creating references for WisecondorX

    nf-cmgg/wisecondorx's past year of commit activity
    Nextflow 1 MIT 1 0 2 Updated Jun 30, 2026
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