Skip to content

Remove the default timestamp from default samplesheet directory #15

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
nvnieuwk merged 1 commit into from
Sep 16, 2026
Merged

Remove the default timestamp from default samplesheet directory #15

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@
1. Removed the hardcoded setup of samplesheet generation and migrated to a worksheet implementation to generate samplesheets. See the [worksheets](docs/worksheets.md) documentation for more information
2. Use `clusters` to get the amount of reads for rnafusion runs instead of the `yield_`
3. Resolved all configuration warnings
4. Removed the timestamp from the defaults samplesheets output directory

## 0.2.8

Expand Down
4 changes: 1 addition & 3 deletions src/main/groovy/nfcmgg/plugin/utils/SessionFetcher.groovy
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -30,8 +30,6 @@ import nextflow.Nextflow
@CompileDynamic
class SessionFetcher {

final private static String CREATIONDATE = new Date().format('yyyyMMdd_HHmmss')

static Path getOutdir(Session session) {
String outdirString = session?.params?.get('outdir', null)
Path outdir = outdirString ? Nextflow.file(outdirString) as Path : null
Expand All @@ -43,7 +41,7 @@ class SessionFetcher {
}

static Path getSamplesheetOutdir(Session session) {
return getOutdir(session).resolve("samplesheets/${CREATIONDATE}")
return getOutdir(session).resolve('samplesheets')
}

static List<Map<String, Object>> getInputSamplesheetList(Session session) {
Expand Down
Loading