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bwamem3/index, bwamem3/mem: bump bwa-mem3 to 0.17.0 #13715

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Merged
eduard-watchmaker merged 1 commit into from
Nov 13, 2026
Merged

bwamem3/index, bwamem3/mem: bump bwa-mem3 to 0.17.0 #13715

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44 changes: 22 additions & 22 deletions ...ock/linux_amd64-bd-b56ccc800b165a7e_1.txt → ...ock/linux_amd64-bd-dfd4e361b022ff06_1.txt
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44 changes: 22 additions & 22 deletions ...ock/linux_arm64-bd-d9c39c7fb055095e_1.txt → ...ock/linux_arm64-bd-b1708a369edc0a4b_1.txt
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2 changes: 1 addition & 1 deletion modules/nf-core/bwamem3/index/environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,4 +5,4 @@ channels:
- bioconda
dependencies:
# renovate: datasource=conda depName=bioconda/bwa-mem3
- "bioconda::bwa-mem3=0.16.0"
- "bioconda::bwa-mem3=0.17.0"
4 changes: 2 additions & 2 deletions modules/nf-core/bwamem3/index/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -9,8 +9,8 @@ process BWAMEM3_INDEX {

conda "${moduleDir}/environment.yml"
container "${workflow.containerEngine in ['singularity', 'apptainer'] && !task.ext.singularity_pull_docker_container
? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/98/98b0f53f5aed4a3743c17acf6fe59bb0587228a320a6bbe01b3ff3e9ccf85d43/data'
: 'community.wave.seqera.io/library/bwa-mem3:0.16.0--b56ccc800b165a7e'}"
? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/fa/fa51b6d8b6924f5ccb76a0b6d5380899901edbe821bf1440a3517029f198593a/data'
: 'community.wave.seqera.io/library/bwa-mem3:0.17.0--dfd4e361b022ff06'}"

input:
tuple val(meta), path(fasta)
Expand Down
30 changes: 15 additions & 15 deletions modules/nf-core/bwamem3/index/meta.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -71,24 +71,24 @@ maintainers:
containers:
docker:
linux/arm64:
name: community.wave.seqera.io/library/bwa-mem3:0.16.0--d9c39c7fb055095e
build_id: bd-d9c39c7fb055095e_1
scan_id: sc-2da9986395531902_1
name: community.wave.seqera.io/library/bwa-mem3:0.17.0--b1708a369edc0a4b
build_id: bd-b1708a369edc0a4b_1
scan_id: sc-31a62c0d7d3f953d_1
linux/amd64:
name: community.wave.seqera.io/library/bwa-mem3:0.16.0--b56ccc800b165a7e
build_id: bd-b56ccc800b165a7e_1
scan_id: sc-57ddb57e00375a8c_1
name: community.wave.seqera.io/library/bwa-mem3:0.17.0--dfd4e361b022ff06
build_id: bd-dfd4e361b022ff06_1
scan_id: sc-1c1d837e52a8e73c_1
singularity:
linux/amd64:
name: oras://community.wave.seqera.io/library/bwa-mem3:0.16.0--17e1d29274d441bb
build_id: bd-17e1d29274d441bb_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/98/98b0f53f5aed4a3743c17acf6fe59bb0587228a320a6bbe01b3ff3e9ccf85d43/data
linux/arm64:
name: oras://community.wave.seqera.io/library/bwa-mem3:0.16.0--6b818219a81b827f
build_id: bd-6b818219a81b827f_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/6c/6c07549c04bd7c7c8fc6b1d63eed3707b98996ca5c9ac1a0a99c6ac9ca71f9ad/data
name: oras://community.wave.seqera.io/library/bwa-mem3:0.17.0--f0b577e015f4da29
build_id: bd-f0b577e015f4da29_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/19/197c726992576ee3cb8a1f5c1e7efc48884f355691176fd9beea1b0c63d90ff3/data
linux/amd64:
name: oras://community.wave.seqera.io/library/bwa-mem3:0.17.0--81afc3b4105fd554
build_id: bd-81afc3b4105fd554_1
https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/fa/fa51b6d8b6924f5ccb76a0b6d5380899901edbe821bf1440a3517029f198593a/data
conda:
linux/amd64:
lock_file: modules/nf-core/bwamem3/index/.conda-lock/linux_amd64-bd-b56ccc800b165a7e_1.txt
lock_file: modules/nf-core/bwamem3/index/.conda-lock/linux_amd64-bd-dfd4e361b022ff06_1.txt
linux/arm64:
lock_file: modules/nf-core/bwamem3/index/.conda-lock/linux_arm64-bd-d9c39c7fb055095e_1.txt
lock_file: modules/nf-core/bwamem3/index/.conda-lock/linux_arm64-bd-b1708a369edc0a4b_1.txt
22 changes: 11 additions & 11 deletions modules/nf-core/bwamem3/index/tests/main.nf.test.snap
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Original file line number Diff line number Diff line change
Expand Up @@ -22,12 +22,12 @@
[
"BWAMEM3_INDEX",
"bwamem3",
"0.16.0"
"0.17.0"
]
]
}
],
"timestamp": "2026-11-11T16:20:38.60350813",
"timestamp": "2026-11-12T20:22:23.03530456",
"meta": {
"nf-test": "0.9.5",
"nextflow": "25.10.4"
Expand All @@ -53,12 +53,12 @@
[
"BWAMEM3_INDEX",
"bwamem3",
"0.16.0"
"0.17.0"
]
]
}
],
"timestamp": "2026-11-09T09:27:11.538896",
"timestamp": "2026-11-12T20:22:18.931836037",
"meta": {
"nf-test": "0.9.5",
"nextflow": "25.10.4"
Expand Down Expand Up @@ -87,12 +87,12 @@
[
"BWAMEM3_INDEX",
"bwamem3",
"0.16.0"
"0.17.0"
]
]
}
],
"timestamp": "2026-11-11T16:20:46.756059088",
"timestamp": "2026-11-12T20:22:31.145562099",
"meta": {
"nf-test": "0.9.5",
"nextflow": "25.10.4"
Expand Down Expand Up @@ -121,12 +121,12 @@
[
"BWAMEM3_INDEX",
"bwamem3",
"0.16.0"
"0.17.0"
]
]
}
],
"timestamp": "2026-11-11T16:20:42.686281819",
"timestamp": "2026-11-12T20:22:27.108078838",
"meta": {
"nf-test": "0.9.5",
"nextflow": "25.10.4"
Expand All @@ -152,15 +152,15 @@
[
"BWAMEM3_INDEX",
"bwamem3",
"0.16.0"
"0.17.0"
]
]
}
],
"timestamp": "2026-11-04T10:37:45.14069",
"timestamp": "2026-11-12T20:22:14.909505444",
"meta": {
"nf-test": "0.9.5",
"nextflow": "26.10.5"
"nextflow": "25.10.4"
}
}
}
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